Literature DB >> 18593815

The biological effects of simple tandem repeats: lessons from the repeat expansion diseases.

Karen Usdin1.   

Abstract

Tandem repeats are common features of both prokaryote and eukaryote genomes, where they can be found not only in intergenic regions but also in both the noncoding and coding regions of a variety of different genes. The repeat expansion diseases are a group of human genetic disorders caused by long and highly polymorphic tandem repeats. These disorders provide many examples of the effects that such repeats can have on many biological processes. While repeats in the coding sequence can result in the generation of toxic or malfunctioning proteins, noncoding repeats can also have significant effects including the generation of chromosome fragility, the silencing of the genes in which they are located, the modulation of transcription and translation, and the sequestering of proteins involved in processes such as splicing and cell architecture.

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Year:  2008        PMID: 18593815      PMCID: PMC3960014          DOI: 10.1101/gr.070409.107

Source DB:  PubMed          Journal:  Genome Res        ISSN: 1088-9051            Impact factor:   9.043


  136 in total

1.  Triplet repeats in human genome: distribution and their association with genes and other genomic regions.

Authors:  Subbaya Subramanian; Vamsi M Madgula; Ranjan George; Rakesh K Mishra; Madhusudhan W Pandit; Chanderashekar S Kumar; Lalji Singh
Journal:  Bioinformatics       Date:  2003-03-22       Impact factor: 6.937

Review 2.  Argonaute proteins: mediators of RNA silencing.

Authors:  Lasse Peters; Gunter Meister
Journal:  Mol Cell       Date:  2007-06-08       Impact factor: 17.970

3.  Replication of a common fragile site, FRA3B, occurs late in S phase and is delayed further upon induction: implications for the mechanism of fragile site induction.

Authors:  M M Le Beau; F V Rassool; M E Neilly; R Espinosa; T W Glover; D I Smith; T W McKeithan
Journal:  Hum Mol Genet       Date:  1998-04       Impact factor: 6.150

4.  CUG repeats present in myotonin kinase RNA form metastable "slippery" hairpins.

Authors:  M Napierała; W J Krzyzosiak
Journal:  J Biol Chem       Date:  1997-12-05       Impact factor: 5.157

5.  The (TAAAA)n microsatellite polymorphism in the SHBG gene influences serum SHBG levels in women with polycystic ovary syndrome.

Authors:  Polonca Ferk; Natasa Teran; Ksenija Gersak
Journal:  Hum Reprod       Date:  2006-12-22       Impact factor: 6.918

6.  The FMR1 CGG repeat mouse displays ubiquitin-positive intranuclear neuronal inclusions; implications for the cerebellar tremor/ataxia syndrome.

Authors:  Rob Willemsen; Marianne Hoogeveen-Westerveld; Surya Reis; Joan Holstege; Lies-Anne W F M Severijnen; Ingeborg M Nieuwenhuizen; Mariette Schrier; Leontine van Unen; Flora Tassone; Andre T Hoogeveen; Paul J Hagerman; Edwin J Mientjes; Ben A Oostra
Journal:  Hum Mol Genet       Date:  2003-05-01       Impact factor: 6.150

7.  Expansion and length-dependent fragility of CTG repeats in yeast.

Authors:  C H Freudenreich; S M Kantrow; V A Zakian
Journal:  Science       Date:  1998-02-06       Impact factor: 47.728

8.  The GAA triplet-repeat expansion in Friedreich ataxia interferes with transcription and may be associated with an unusual DNA structure.

Authors:  S I Bidichandani; T Ashizawa; P I Patel
Journal:  Am J Hum Genet       Date:  1998-01       Impact factor: 11.025

9.  Regional FMRP deficits and large repeat expansions into the full mutation range in a new Fragile X premutation mouse model.

Authors:  Ali Entezam; Rea Biacsi; Bonnie Orrison; Tapas Saha; Gloria E Hoffman; Ed Grabczyk; Robert L Nussbaum; Karen Usdin
Journal:  Gene       Date:  2007-03-16       Impact factor: 3.688

10.  Repeat-induced epigenetic changes in intron 1 of the frataxin gene and its consequences in Friedreich ataxia.

Authors:  Eriko Greene; Lata Mahishi; Ali Entezam; Daman Kumari; Karen Usdin
Journal:  Nucleic Acids Res       Date:  2007-05-03       Impact factor: 16.971

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  83 in total

1.  Role of everlasting triplet expansions in protein evolution.

Authors:  Zohar Koren; Edward N Trifonov
Journal:  J Mol Evol       Date:  2010-12-16       Impact factor: 2.395

Review 2.  New pathologic mechanisms in nucleotide repeat expansion disorders.

Authors:  C M Rodriguez; P K Todd
Journal:  Neurobiol Dis       Date:  2019-06-21       Impact factor: 5.996

3.  Investigation of Hanwoo-specific structural variations using whole-genome sequencing data.

Authors:  Jangho Park; Wonseok Shin; Seyoung Mun; Man Hwan Oh; Dajeong Lim; Dong-Yep Oh; Youngjune Bhak; Jong Bhak; Yong-Soo Park; Kyudong Han
Journal:  Genes Genomics       Date:  2018-12-08       Impact factor: 1.839

4.  Genome-wide evidence for selection acting on single amino acid repeats.

Authors:  Wilfried Haerty; G Brian Golding
Journal:  Genome Res       Date:  2010-01-07       Impact factor: 9.043

5.  Variability in a Short Tandem Repeat Mediates Complex Epistatic Interactions in Arabidopsis thaliana.

Authors:  Maximilian Oliver Press; Christine Queitsch
Journal:  Genetics       Date:  2016-11-18       Impact factor: 4.562

6.  Differential distribution and occurrence of simple sequence repeats in diverse geminivirus genomes.

Authors:  B George; Ch Mashhood Alam; S K Jain; Ch Sharfuddin; S Chakraborty
Journal:  Virus Genes       Date:  2012-08-18       Impact factor: 2.332

7.  TRedD--a database for tandem repeats over the edit distance.

Authors:  Dina Sokol; Firat Atagun
Journal:  Database (Oxford)       Date:  2010-07-06       Impact factor: 3.451

8.  A versatile palindromic amphipathic repeat coding sequence horizontally distributed among diverse bacterial and eucaryotic microbes.

Authors:  Kerstin Röske; Mark F Foecking; Shibu Yooseph; John I Glass; Michael J Calcutt; Kim S Wise
Journal:  BMC Genomics       Date:  2010-07-13       Impact factor: 3.969

9.  Trinucleotide repeats in human genome and exome.

Authors:  Piotr Kozlowski; Mateusz de Mezer; Wlodzimierz J Krzyzosiak
Journal:  Nucleic Acids Res       Date:  2010-03-09       Impact factor: 16.971

10.  Tandem repeats modify the structure of human genes hosted in segmental duplications.

Authors:  Anna De Grassi; Francesca D Ciccarelli
Journal:  Genome Biol       Date:  2009-12-02       Impact factor: 13.583

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