Literature DB >> 18586348

Rapidly regulated genes are intron poor.

Daniel C Jeffares1, Christopher J Penkett, Jürg Bähler.   

Abstract

We show that genes with rapidly changing expression levels in response to stress contain significantly lower intron densities in yeasts, thale cress and mice. Therefore, we propose that introns can delay regulatory responses and are selected against in genes whose transcripts require rapid adjustment for survival of environmental challenges. These findings could provide an explanation for the apparent extensive intron loss during the evolution of some eukaryotic lineages.

Entities:  

Mesh:

Year:  2008        PMID: 18586348     DOI: 10.1016/j.tig.2008.05.006

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  122 in total

1.  Evaluation of models of the mechanisms underlying intron loss and gain in Aspergillus fungi.

Authors:  Lei-Ying Zhang; Yu-Fei Yang; Deng-Ke Niu
Journal:  J Mol Evol       Date:  2010-09-23       Impact factor: 2.395

2.  Genome-wide analysis of HSP90 gene family in the Mediterranean olive (Olea europaea subsp. europaea) provides insight into structural patterns, evolution and functional diversity.

Authors:  Inchirah Bettaieb; Jihen Hamdi; Dhia Bouktila
Journal:  Physiol Mol Biol Plants       Date:  2020-11-19

3.  Analysis of a genome-wide set of gene deletions in the fission yeast Schizosaccharomyces pombe.

Authors:  Dong-Uk Kim; Jacqueline Hayles; Dongsup Kim; Valerie Wood; Han-Oh Park; Misun Won; Hyang-Sook Yoo; Trevor Duhig; Miyoung Nam; Georgia Palmer; Sangjo Han; Linda Jeffery; Seung-Tae Baek; Hyemi Lee; Young Sam Shim; Minho Lee; Lila Kim; Kyung-Sun Heo; Eun Joo Noh; Ah-Reum Lee; Young-Joo Jang; Kyung-Sook Chung; Shin-Jung Choi; Jo-Young Park; Youngwoo Park; Hwan Mook Kim; Song-Kyu Park; Hae-Joon Park; Eun-Jung Kang; Hyong Bai Kim; Hyun-Sam Kang; Hee-Moon Park; Kyunghoon Kim; Kiwon Song; Kyung Bin Song; Paul Nurse; Kwang-Lae Hoe
Journal:  Nat Biotechnol       Date:  2010-05-16       Impact factor: 54.908

4.  Evidence for gene length as a determinant of gene coexpression in protein complexes.

Authors:  Xiaoshu Chen; Suhua Shi; Xionglei He
Journal:  Genetics       Date:  2009-07-20       Impact factor: 4.562

5.  Higher frequency of intron loss from the promoter proximally paused genes of Drosophila melanogaster.

Authors:  Li Jiang; Xue-Nan Li; Deng-Ke Niu
Journal:  Fly (Austin)       Date:  2014       Impact factor: 2.160

6.  An overview of the introns-first theory.

Authors:  David Penny; Marc P Hoeppner; Anthony M Poole; Daniel C Jeffares
Journal:  J Mol Evol       Date:  2009-09-24       Impact factor: 2.395

7.  Selection for the compactness of highly expressed genes in Gallus gallus.

Authors:  You S Rao; Zhang F Wang; Xue W Chai; Guo Z Wu; Ming Zhou; Qing H Nie; Xi Q Zhang
Journal:  Biol Direct       Date:  2010-05-14       Impact factor: 4.540

8.  Exon definition as a potential negative force against intron losses in evolution.

Authors:  Deng-Ke Niu
Journal:  Biol Direct       Date:  2008-11-13       Impact factor: 4.540

9.  In plants, expression breadth and expression level distinctly and non-linearly correlate with gene structure.

Authors:  Hangxing Yang
Journal:  Biol Direct       Date:  2009-11-21       Impact factor: 4.540

10.  Rice sHsp genes: genomic organization and expression profiling under stress and development.

Authors:  Neelam K Sarkar; Yeon-Ki Kim; Anil Grover
Journal:  BMC Genomics       Date:  2009-08-24       Impact factor: 3.969

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.