Literature DB >> 18582476

Detection of intermediates and kinetic control during assembly of bacteriophage P22 procapsid.

Roman Tuma1, Hiro Tsuruta, Kenneth H French, Peter E Prevelige.   

Abstract

Bacteriophage P22 serves as a model for the assembly and maturation of other icosahedral double-stranded DNA viruses. P22 coat and scaffolding proteins assemble in vitro into an icosahedral procapsid, which then expands during DNA packaging (maturation). Efficient in vitro assembly makes this system suitable for design and production of monodisperse spherical nanoparticles (diameter approximately 50 nm). In this work, we explore the possibility of controlling the outcome of assembly by scaffolding protein engineering. The scaffolding protein exists in monomer-dimer-tetramer equilibrium. We address the role of monomers and dimers in assembly by using three different scaffolding proteins with altered monomer-dimer equilibrium (weak dimer, covalent dimer, monomer). The progress and outcome of assembly was monitored by time-resolved X-ray scattering, which allowed us to distinguish between closed shells and incomplete assembly intermediates. Binding of scaffolding monomer activates the coat protein for assembly. Excess dimeric scaffolding protein resulted in rapid nucleation and kinetic trapping yielding incomplete shells. Addition of monomeric wild-type scaffold with excess coat protein completed these metastable shells. Thus, the monomeric scaffolding protein plays an essential role in the elongation phase by activating the coat and effectively lowering its critical concentration for assembly.

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Year:  2008        PMID: 18582476      PMCID: PMC2610482          DOI: 10.1016/j.jmb.2008.06.020

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  42 in total

1.  Kinetic and calorimetric evidence for two distinct scaffolding protein binding populations within the bacteriophage P22 procapsid.

Authors:  M H Parker; C G Brouillette; P E Prevelige
Journal:  Biochemistry       Date:  2001-07-31       Impact factor: 3.162

2.  Mechanism of scaffolding-directed virus assembly suggested by comparison of scaffolding-containing and scaffolding-lacking P22 procapsids.

Authors:  P A Thuman-Commike; B Greene; J A Malinski; M Burbea; A McGough; W Chiu; P E Prevelige
Journal:  Biophys J       Date:  1999-06       Impact factor: 4.033

Review 3.  Are weak protein-protein interactions the general rule in capsid assembly?

Authors:  Adam Zlotnick
Journal:  Virology       Date:  2003-10-25       Impact factor: 3.616

4.  Autoregulation of the bacteriophage P22 scaffolding protein gene.

Authors:  E Wyckoff; S Casjens
Journal:  J Virol       Date:  1985-01       Impact factor: 5.103

5.  P22 morphogenesis. I: Catalytic scaffolding protein in capsid assembly.

Authors:  S Casjens; J King
Journal:  J Supramol Struct       Date:  1974

6.  Nucleation and growth phases in the polymerization of coat and scaffolding subunits into icosahedral procapsid shells.

Authors:  P E Prevelige; D Thomas; J King
Journal:  Biophys J       Date:  1993-03       Impact factor: 4.033

7.  Stopped-flow solution scattering using synchrotron radiation: apparatus, data collection and data analysis.

Authors:  A G Fowler; A M Foote; M F Moody; P Vachette; S W Provencher; A Gabriel; J Bordas; M H Koch
Journal:  J Biochem Biophys Methods       Date:  1983-07

8.  Quantitative analysis of multi-component spherical virus assembly: scaffolding protein contributes to the global stability of phage P22 procapsids.

Authors:  Kristin N Parent; Adam Zlotnick; Carolyn M Teschke
Journal:  J Mol Biol       Date:  2006-04-21       Impact factor: 5.469

9.  Mechanism of capsid assembly for an icosahedral plant virus.

Authors:  A Zlotnick; R Aldrich; J M Johnson; P Ceres; M J Young
Journal:  Virology       Date:  2000-11-25       Impact factor: 3.616

10.  A simple, RNA-mediated allosteric switch controls the pathway to formation of a T=3 viral capsid.

Authors:  Peter G Stockley; Ottar Rolfsson; Gary S Thompson; Gabriella Basnak; Simona Francese; Nicola J Stonehouse; Steven W Homans; Alison E Ashcroft
Journal:  J Mol Biol       Date:  2007-03-15       Impact factor: 5.469

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  23 in total

1.  Understanding the concentration dependence of viral capsid assembly kinetics--the origin of the lag time and identifying the critical nucleus size.

Authors:  Michael F Hagan; Oren M Elrad
Journal:  Biophys J       Date:  2010-03-17       Impact factor: 4.033

2.  Derivative-Free Optimization of Rate Parameters of Capsid Assembly Models from Bulk in Vitro Data.

Authors:  Lu Xie; Gregory R Smith; Russell Schwartz
Journal:  IEEE/ACM Trans Comput Biol Bioinform       Date:  2016-05-05       Impact factor: 3.710

Review 3.  Mechanisms of ferritin assembly studied by time-resolved small-angle X-ray scattering.

Authors:  Daisuke Sato; Masamichi Ikeguchi
Journal:  Biophys Rev       Date:  2019-05-08

4.  Applying molecular crowding models to simulations of virus capsid assembly in vitro.

Authors:  Gregory R Smith; Lu Xie; Byoungkoo Lee; Russell Schwartz
Journal:  Biophys J       Date:  2014-01-07       Impact factor: 4.033

5.  NMR Mapping of Disordered Segments from a Viral Scaffolding Protein Enclosed in a 23 MDa Procapsid.

Authors:  Richard D Whitehead; Carolyn M Teschke; Andrei T Alexandrescu
Journal:  Biophys J       Date:  2019-09-06       Impact factor: 4.033

6.  Conformational changes in bacteriophage P22 scaffolding protein induced by interaction with coat protein.

Authors:  G Pauline Padilla-Meier; Carolyn M Teschke
Journal:  J Mol Biol       Date:  2011-05-14       Impact factor: 5.469

7.  The bacteriophage lambda gpNu3 scaffolding protein is an intrinsically disordered and biologically functional procapsid assembly catalyst.

Authors:  Eva Margarita Medina; Benjamin T Andrews; Eri Nakatani; Carlos Enrique Catalano
Journal:  J Mol Biol       Date:  2011-07-29       Impact factor: 5.469

8.  Mechanical disassembly of single virus particles reveals kinetic intermediates predicted by theory.

Authors:  Milagros Castellanos; Rebeca Pérez; Pablo J P Carrillo; Pedro J de Pablo; Mauricio G Mateu
Journal:  Biophys J       Date:  2012-06-05       Impact factor: 4.033

9.  Assembly-directed antivirals differentially bind quasiequivalent pockets to modify hepatitis B virus capsid tertiary and quaternary structure.

Authors:  Sarah P Katen; Zhenning Tan; Srinivas Reddy Chirapu; M G Finn; Adam Zlotnick
Journal:  Structure       Date:  2013-07-18       Impact factor: 5.006

Review 10.  The structural dynamics of macromolecular processes.

Authors:  Daniel Russel; Keren Lasker; Jeremy Phillips; Dina Schneidman-Duhovny; Javier A Velázquez-Muriel; Andrej Sali
Journal:  Curr Opin Cell Biol       Date:  2009-02-14       Impact factor: 8.382

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