Literature DB >> 18573810

Human Proteinpedia as a resource for clinical proteomics.

Suresh Mathivanan1, Akhilesh Pandey.   

Abstract

Clinical proteomics is an emerging field that deals with the use of proteomic technologies for medical applications. With a major objective of identifying proteins involved in pathological processes and as potential biomarkers, this field is already gaining momentum. Consequently, clinical proteomics data are being generated at a rapid pace, although mechanisms of sharing such data with the biomedical community lag far behind. Most of these data are either provided as supplementary information through journal web sites or directly made available by the authors through their own web resources. Integration of these data within a single resource that displays information in the context of individual proteins is likely to enhance the use of proteomic data in biomedical research. Human Proteinpedia is one such portal that unifies human proteomic data under a single banner. The goal of this resource is to ultimately capture and integrate all proteomic data obtained from individual studies on normal and diseased tissues. We anticipate that harnessing of these data will help prioritize experiments related to protein targets and also permit meta-analysis to uncover molecular signatures of disease. Finally, we encourage all biomedical investigators to maximize dissemination of their valuable proteomic data to rest of the community by active participation in existing repositories such as Human Proteinpedia.

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Year:  2008        PMID: 18573810      PMCID: PMC2559939          DOI: 10.1074/mcp.R800008-MCP200

Source DB:  PubMed          Journal:  Mol Cell Proteomics        ISSN: 1535-9476            Impact factor:   5.911


  41 in total

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Review 2.  Tissue microarray (TMA) applications: implications for molecular medicine.

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3.  Supplementary data need to be kept in public repositories.

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4.  Reporting protein identification data: the next generation of guidelines.

Authors:  Ralph A Bradshaw; Alma L Burlingame; Steven Carr; Ruedi Aebersold
Journal:  Mol Cell Proteomics       Date:  2006-05       Impact factor: 5.911

Review 5.  Mass spectrometry-based functional proteomics: from molecular machines to protein networks.

Authors:  Thomas Köcher; Giulio Superti-Furga
Journal:  Nat Methods       Date:  2007-10       Impact factor: 28.547

6.  Democratizing proteomics data.

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Journal:  Nat Biotechnol       Date:  2007-03       Impact factor: 54.908

7.  Proteolytic 18O labeling for comparative proteomics: model studies with two serotypes of adenovirus.

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Journal:  Anal Chem       Date:  2001-07-01       Impact factor: 6.986

8.  A human protein atlas for normal and cancer tissues based on antibody proteomics.

Authors:  Mathias Uhlén; Erik Björling; Charlotta Agaton; Cristina Al-Khalili Szigyarto; Bahram Amini; Elisabet Andersen; Ann-Catrin Andersson; Pia Angelidou; Anna Asplund; Caroline Asplund; Lisa Berglund; Kristina Bergström; Harry Brumer; Dijana Cerjan; Marica Ekström; Adila Elobeid; Cecilia Eriksson; Linn Fagerberg; Ronny Falk; Jenny Fall; Mattias Forsberg; Marcus Gry Björklund; Kristoffer Gumbel; Asif Halimi; Inga Hallin; Carl Hamsten; Marianne Hansson; My Hedhammar; Görel Hercules; Caroline Kampf; Karin Larsson; Mats Lindskog; Wald Lodewyckx; Jan Lund; Joakim Lundeberg; Kristina Magnusson; Erik Malm; Peter Nilsson; Jenny Odling; Per Oksvold; Ingmarie Olsson; Emma Oster; Jenny Ottosson; Linda Paavilainen; Anja Persson; Rebecca Rimini; Johan Rockberg; Marcus Runeson; Asa Sivertsson; Anna Sköllermo; Johanna Steen; Maria Stenvall; Fredrik Sterky; Sara Strömberg; Mårten Sundberg; Hanna Tegel; Samuel Tourle; Eva Wahlund; Annelie Waldén; Jinghong Wan; Henrik Wernérus; Joakim Westberg; Kenneth Wester; Ulla Wrethagen; Lan Lan Xu; Sophia Hober; Fredrik Pontén
Journal:  Mol Cell Proteomics       Date:  2005-08-27       Impact factor: 5.911

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10.  BioGRID: a general repository for interaction datasets.

Authors:  Chris Stark; Bobby-Joe Breitkreutz; Teresa Reguly; Lorrie Boucher; Ashton Breitkreutz; Mike Tyers
Journal:  Nucleic Acids Res       Date:  2006-01-01       Impact factor: 16.971

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  6 in total

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Authors:  A S Cristino; S M Williams; Z Hawi; J-Y An; M A Bellgrove; C E Schwartz; L da F Costa; C Claudianos
Journal:  Mol Psychiatry       Date:  2013-02-26       Impact factor: 15.992

2.  Investigating protein isoforms via proteomics: a feasibility study.

Authors:  Paul Blakeley; Jennifer A Siepen; Craig Lawless; Simon J Hubbard
Journal:  Proteomics       Date:  2010-03       Impact factor: 3.984

Review 3.  The development of selected reaction monitoring methods for targeted proteomics via empirical refinement.

Authors:  Michael S Bereman; Brendan MacLean; Daniela M Tomazela; Daniel C Liebler; Michael J MacCoss
Journal:  Proteomics       Date:  2012-04       Impact factor: 3.984

4.  Vesiclepedia: a compendium for extracellular vesicles with continuous community annotation.

Authors:  Hina Kalra; Richard J Simpson; Hong Ji; Elena Aikawa; Peter Altevogt; Philip Askenase; Vincent C Bond; Francesc E Borràs; Xandra Breakefield; Vivian Budnik; Edit Buzas; Giovanni Camussi; Aled Clayton; Emanuele Cocucci; Juan M Falcon-Perez; Susanne Gabrielsson; Yong Song Gho; Dwijendra Gupta; H C Harsha; An Hendrix; Andrew F Hill; Jameel M Inal; Guido Jenster; Eva-Maria Krämer-Albers; Sai Kiang Lim; Alicia Llorente; Jan Lötvall; Antonio Marcilla; Lucia Mincheva-Nilsson; Irina Nazarenko; Rienk Nieuwland; Esther N M Nolte-'t Hoen; Akhilesh Pandey; Tushar Patel; Melissa G Piper; Stefano Pluchino; T S Keshava Prasad; Lawrence Rajendran; Graca Raposo; Michel Record; Gavin E Reid; Francisco Sánchez-Madrid; Raymond M Schiffelers; Pia Siljander; Allan Stensballe; Willem Stoorvogel; Douglas Taylor; Clotilde Thery; Hadi Valadi; Bas W M van Balkom; Jesús Vázquez; Michel Vidal; Marca H M Wauben; María Yáñez-Mó; Margot Zoeller; Suresh Mathivanan
Journal:  PLoS Biol       Date:  2012-12-18       Impact factor: 8.029

5.  A multilectin affinity approach for comparative glycoprotein profiling of rheumatoid arthritis and spondyloarthropathy.

Authors:  Rakesh Sharma; Renu Goel; Mitali Bhattacharjee; Lavanya Balakrishnan; Santosh Renuse; Jayshree Advani; Shantal Tankala Gupta; Renu Verma; Sneha M Pinto; Nirujogi Raja Sekhar; Bipin Nair; T S Keshava Prasad; H C Harsha; Ramesh Jois; Subramanian Shankar; Akhilesh Pandey
Journal:  Clin Proteomics       Date:  2013-09-06       Impact factor: 3.988

6.  SysPIMP: the web-based systematical platform for identifying human disease-related mutated sequences from mass spectrometry.

Authors:  Hong Xi; Jongsun Park; Guohui Ding; Yong-Hwan Lee; Yixue Li
Journal:  Nucleic Acids Res       Date:  2008-11-26       Impact factor: 16.971

  6 in total

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