Literature DB >> 18573554

Towards a universally adaptable method for quantitative extraction of high-purity nucleic acids from soil.

Derek Persoh1, Susanne Theuerl, François Buscot, Gerhard Rambold.   

Abstract

A universally adaptable protocol for quantitative extraction of high-purity nucleic acids from soil is presented. A major problem regarding the extraction of nucleic acids from soil is the presence of humic substances, which interfere with the extraction process itself and in subsequent analytical manipulations. By the approach described here, the humic compounds are precipitated prior to cell lysis with Al(2)(SO(4))(3), and thus eliminated prior to the nucleic acid extraction. The protocol allows for removing of a considerable content and range of humic acids and should therefore be applicable for a wide spectrum of soil types. Accordingly, reproducible results in analyses of different soil types are made possible, inclusively for quantitative comparisons.

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Year:  2008        PMID: 18573554     DOI: 10.1016/j.mimet.2008.04.009

Source DB:  PubMed          Journal:  J Microbiol Methods        ISSN: 0167-7012            Impact factor:   2.363


  15 in total

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Journal:  Folia Microbiol (Praha)       Date:  2010-08-03       Impact factor: 2.099

2.  Method for RNA extraction and cDNA library construction from microbes in crop rhizosphere soil.

Authors:  Changxun Fang; Tiecheng Xu; Changliang Ye; Likun Huang; Qingshui Wang; Wenxiong Lin
Journal:  World J Microbiol Biotechnol       Date:  2014-02       Impact factor: 3.312

3.  Effect of soil clay content on RNA isolation and on detection and quantification of bacterial gene transcripts in soil by quantitative reverse transcription-PCR.

Authors:  A Novinscak; M Filion
Journal:  Appl Environ Microbiol       Date:  2011-07-01       Impact factor: 4.792

4.  Changes in rice allelopathy and rhizosphere microflora by inhibiting rice phenylalanine ammonia-lyase gene expression.

Authors:  Changxun Fang; Yuee Zhuang; Tiecheng Xu; Yingzhe Li; Yue Li; Wenxiong Lin
Journal:  J Chem Ecol       Date:  2013-02-06       Impact factor: 2.626

5.  Flooding Duration Affects the Structure of Terrestrial and Aquatic Microbial Eukaryotic Communities.

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Journal:  Microb Ecol       Date:  2017-10-12       Impact factor: 4.552

6.  Contrasting denitrifier communities relate to contrasting N2O emission patterns from acidic peat soils in arctic tundra.

Authors:  Katharina Palmer; Christina Biasi; Marcus A Horn
Journal:  ISME J       Date:  2011-12-01       Impact factor: 10.302

7.  Estimates of Soil Bacterial Ribosome Content and Diversity Are Significantly Affected by the Nucleic Acid Extraction Method Employed.

Authors:  Pia K Wüst; Heiko Nacke; Kristin Kaiser; Sven Marhan; Johannes Sikorski; Ellen Kandeler; Rolf Daniel; Jörg Overmann
Journal:  Appl Environ Microbiol       Date:  2016-04-18       Impact factor: 4.792

8.  Accurate quantification of microorganisms in PCR-inhibiting environmental DNA extracts by a novel internal amplification control approach using Biotrove OpenArrays.

Authors:  R van Doorn; M M Klerks; M P E van Gent-Pelzer; A G C L Speksnijder; G A Kowalchuk; C D Schoen
Journal:  Appl Environ Microbiol       Date:  2009-10-02       Impact factor: 4.792

9.  Effects of DNA preservation solution and DNA extraction methods on microbial community profiling of soil.

Authors:  Paul Iturbe-Espinoza; Bernd W Brandt; Martin Braster; Matthijs Bonte; David M Brown; Rob J M van Spanning
Journal:  Folia Microbiol (Praha)       Date:  2021-04-09       Impact factor: 2.099

10.  Development of a one-step immunocapture real-time RT-PCR assay for detection of tobacco mosaic virus in soil.

Authors:  Jin-Guang Yang; Feng-Long Wang; De-Xin Chen; Li-Li Shen; Yu-Mei Qian; Zhi-Yong Liang; Wen-Chang Zhou; Tai-He Yan
Journal:  Sensors (Basel)       Date:  2012-12-04       Impact factor: 3.576

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