Literature DB >> 18573077

Protein design by directed evolution.

Christian Jäckel1, Peter Kast, Donald Hilvert.   

Abstract

While nature evolved polypeptides over billions of years, protein design by evolutionary mimicry is progressing at a far more rapid pace. The mutation, selection, and amplification steps of the evolutionary cycle may be imitated in the laboratory using existing proteins, or molecules created de novo from random sequence space, as starting templates. However, the astronomically large number of possible polypeptide sequences remains an obstacle to identifying and isolating functionally interesting variants. Intelligently designed libraries and improved search techniques are consequently important for future advances. In this regard, combining experimental and computational methods holds particular promise for the creation of tailored protein receptors and catalysts for tasks unimagined by nature.

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Year:  2008        PMID: 18573077     DOI: 10.1146/annurev.biophys.37.032807.125832

Source DB:  PubMed          Journal:  Annu Rev Biophys        ISSN: 1936-122X            Impact factor:   12.981


  101 in total

1.  DNA-catalyzed covalent modification of amino acid side chains in tethered and free peptide substrates.

Authors:  On Yi Wong; P I Pradeepkumar; Scott K Silverman
Journal:  Biochemistry       Date:  2011-05-03       Impact factor: 3.162

2.  High throughput engineering to revitalize a vestigial electron transfer pathway in bacterial photosynthetic reaction centers.

Authors:  Kaitlyn M Faries; Lucas L Kressel; Marc J Wander; Dewey Holten; Philip D Laible; Christine Kirmaier; Deborah K Hanson
Journal:  J Biol Chem       Date:  2012-01-14       Impact factor: 5.157

Review 3.  Overview of regulatory strategies and molecular elements in metabolic engineering of bacteria.

Authors:  Tianwen Wang; Xingyuan Ma; Guocheng Du; Jian Chen
Journal:  Mol Biotechnol       Date:  2012-11       Impact factor: 2.695

Review 4.  Engineered proteins: redox properties and their applications.

Authors:  Shradha Prabhulkar; Hui Tian; Xiaotang Wang; Jun-Jie Zhu; Chen-Zhong Li
Journal:  Antioxid Redox Signal       Date:  2012-06-11       Impact factor: 8.401

Review 5.  Single-molecule force spectroscopy approach to enzyme catalysis.

Authors:  Jorge Alegre-Cebollada; Raul Perez-Jimenez; Pallav Kosuri; Julio M Fernandez
Journal:  J Biol Chem       Date:  2010-04-09       Impact factor: 5.157

6.  Design, selection, and characterization of a split chorismate mutase.

Authors:  Manuel M Müller; Hajo Kries; Eva Csuhai; Peter Kast; Donald Hilvert
Journal:  Protein Sci       Date:  2010-05       Impact factor: 6.725

7.  Experimental library screening demonstrates the successful application of computational protein design to large structural ensembles.

Authors:  Benjamin D Allen; Alex Nisthal; Stephen L Mayo
Journal:  Proc Natl Acad Sci U S A       Date:  2010-11-02       Impact factor: 11.205

Review 8.  Technologies of directed protein evolution in vivo.

Authors:  Artem Blagodatski; Vladimir L Katanaev
Journal:  Cell Mol Life Sci       Date:  2010-12-29       Impact factor: 9.261

9.  Dissipative adaptation in driven self-assembly.

Authors:  Jeremy L England
Journal:  Nat Nanotechnol       Date:  2015-11       Impact factor: 39.213

Review 10.  Biomolecular Assemblies: Moving from Observation to Predictive Design.

Authors:  Corey J Wilson; Andreas S Bommarius; Julie A Champion; Yury O Chernoff; David G Lynn; Anant K Paravastu; Chen Liang; Ming-Chien Hsieh; Jennifer M Heemstra
Journal:  Chem Rev       Date:  2018-10-03       Impact factor: 60.622

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