Literature DB >> 18572927

The 2'-hydroxyl group of the guanosine nucleophile donates a functionally important hydrogen bond in the tetrahymena ribozyme reaction.

James L Hougland1, Raghuvir N Sengupta, Qing Dai, Shirshendu K Deb, Joseph A Piccirilli.   

Abstract

In the first step of self-splicing, group I introns utilize an exogenous guanosine nucleophile to attack the 5'-splice site. Removal of the 2'-hydroxyl of this guanosine results in a 10 (6)-fold loss in activity, indicating that this functional group plays a critical role in catalysis. Biochemical and structural data have shown that this hydroxyl group provides a ligand for one of the catalytic metal ions at the active site. However, whether this hydroxyl group also engages in hydrogen-bonding interactions remains unclear, as attempts to elaborate its function further usually disrupt the interactions with the catalytic metal ion. To address the possibility that this 2'-hydroxyl contributes to catalysis by donating a hydrogen bond, we have used an atomic mutation cycle to probe the functional importance of the guanosine 2'-hydroxyl hydrogen atom. This analysis indicates that, beyond its role as a ligand for a catalytic metal ion, the guanosine 2'-hydroxyl group donates a hydrogen bond in both the ground state and the transition state, thereby contributing to cofactor recognition and catalysis by the intron. Our findings continue an emerging theme in group I intron catalysis: the oxygen atoms at the reaction center form multidentate interactions that function as a cooperative network. The ability to delineate such networks represents a key step in dissecting the complex relationship between RNA structure and catalysis.

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Year:  2008        PMID: 18572927     DOI: 10.1021/bi8000648

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  8 in total

1.  Synthesis of 2'-N-methylamino-2'-deoxyguanosine and 2'-N,N-dimethylamino-2'-deoxyguanosine and their incorporation into RNA by phosphoramidite chemistry.

Authors:  Qing Dai; Raghuvir Sengupta; Shirshendu K Deb; Joseph A Piccirilli
Journal:  J Org Chem       Date:  2011-10-03       Impact factor: 4.354

2.  A rearrangement of the guanosine-binding site establishes an extended network of functional interactions in the Tetrahymena group I ribozyme active site.

Authors:  Marcello Forconi; Raghuvir N Sengupta; Joseph A Piccirilli; Daniel Herschlag
Journal:  Biochemistry       Date:  2010-03-30       Impact factor: 3.162

3.  Recognition of guanosine by dissimilar tRNA methyltransferases.

Authors:  Reiko Sakaguchi; Anders Giessing; Qing Dai; Georges Lahoud; Zita Liutkeviciute; Saulius Klimasauskas; Joseph Piccirilli; Finn Kirpekar; Ya-Ming Hou
Journal:  RNA       Date:  2012-07-30       Impact factor: 4.942

4.  Structure and function converge to identify a hydrogen bond in a group I ribozyme active site.

Authors:  Marcello Forconi; Raghuvir N Sengupta; Mao-Chin Liu; Alan C Sartorelli; Joseph A Piccirilli; Daniel Herschlag
Journal:  Angew Chem Int Ed Engl       Date:  2009       Impact factor: 15.336

Review 5.  Design and Experimental Evolution of trans-Splicing Group I Intron Ribozymes.

Authors:  Ulrich F Müller
Journal:  Molecules       Date:  2017-01-02       Impact factor: 4.411

6.  Enhancement of RNA/Ligand Association Kinetics via an Electrostatic Anchor.

Authors:  Raghuvir N Sengupta; Daniel Herschlag
Journal:  Biochemistry       Date:  2019-06-03       Impact factor: 3.162

7.  An active site rearrangement within the Tetrahymena group I ribozyme releases nonproductive interactions and allows formation of catalytic interactions.

Authors:  Raghuvir N Sengupta; Sabine N S Van Schie; George Giambaşu; Qing Dai; Joseph D Yesselman; Darrin York; Joseph A Piccirilli; Daniel Herschlag
Journal:  RNA       Date:  2015-11-13       Impact factor: 4.942

Review 8.  Phosphodiester models for cleavage of nucleic acids.

Authors:  Satu Mikkola; Tuomas Lönnberg; Harri Lönnberg
Journal:  Beilstein J Org Chem       Date:  2018-04-10       Impact factor: 2.883

  8 in total

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