Literature DB >> 18565544

Crystal structures and mutagenesis of sucrose hydrolase from Xanthomonas axonopodis pv. glycines: insight into the exclusively hydrolytic amylosucrase fold.

Myung-Il Kim1, Hong-Suk Kim, Jin Jung, Sangkee Rhee.   

Abstract

Neisseria polysaccharea amylosucrase (NpAS), a transglucosidase of glycoside hydrolase family 13, is a hydrolase and glucosyltransferase that catalyzes the synthesis of amylose-like polymer from a sucrose substrate. Recently, an NpAS homolog from Xanthomonas axonopodis pv. glycines was identified as a member of the newly defined carbohydrate utilization locus that regulates the utilization of plant sucrose in phytopathogenic bacteria. Interestingly, this enzyme is exclusively a hydrolase and not a glucosyltransferase; it is thus known as sucrose hydrolase (SUH). Here, we elucidated the novel functional features of SUH using X-ray crystallography and site-directed mutagenesis. Four different crystal structures of SUH, including the SUH-Tris and the SUH-sucrose and SUH-glucose complexes, represent structural snapshots along the catalytic reaction coordinate. These structures show that SUH is distinctly different from NpAS in that ligand-induced conformational changes in SUH cause the formation of a pocket-shaped active site and in that SUH lacks the three arginine residues found in the NpAS active site that appear to be crucial for NpAS glucosyltransferase activity. Mutation of SUH to insert these arginines failed to confer glucosyltransferase activity, providing evidence that its enzymatic activity is limited to sucrose hydrolysis by its pocket-shaped active site and the identity of residues in the vicinity of the active site.

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Year:  2008        PMID: 18565544     DOI: 10.1016/j.jmb.2008.05.046

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  8 in total

1.  Structural Analysis of the Catalytic Mechanism and Substrate Specificity of Anabaena Alkaline Invertase InvA Reveals a Novel Glucosidase.

Authors:  Jin Xie; Kun Cai; Hai-Xi Hu; Yong-Liang Jiang; Feng Yang; Peng-Fei Hu; Dong-Dong Cao; Wei-Fang Li; Yuxing Chen; Cong-Zhao Zhou
Journal:  J Biol Chem       Date:  2016-10-24       Impact factor: 5.157

2.  The N253F mutant structure of trehalose synthase from Deinococcus radiodurans reveals an open active-site topology.

Authors:  Sih Yao Chow; Yung Lin Wang; Yu Chiao Hsieh; Guan Chiun Lee; Shwu Huey Liaw
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2017-10-20       Impact factor: 1.056

3.  The structure of amylosucrase from Deinococcus radiodurans has an unusual open active-site topology.

Authors:  Lars K Skov; Sandra Pizzut-Serin; Magali Remaud-Simeon; Heidi A Ernst; Michael Gajhede; Osman Mirza
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2013-08-19

Review 4.  Enzymatic synthesis using glycoside phosphorylases.

Authors:  Ellis C O'Neill; Robert A Field
Journal:  Carbohydr Res       Date:  2014-06-18       Impact factor: 2.104

5.  Structures of trehalose synthase from Deinococcus radiodurans reveal that a closed conformation is involved in catalysis of the intramolecular isomerization.

Authors:  Yung Lin Wang; Sih Yao Chow; Yi Ting Lin; Yu Chiao Hsieh; Guan Chiun Lee; Shwu Huey Liaw
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2014-11-22

6.  A polyaromatic nanocapsule as a sucrose receptor in water.

Authors:  Masahiro Yamashina; Munetaka Akita; Taisuke Hasegawa; Shigehiko Hayashi; Michito Yoshizawa
Journal:  Sci Adv       Date:  2017-08-25       Impact factor: 14.136

7.  Re-refinement from deposited X-ray data can deliver improved models for most PDB entries.

Authors:  Robbie P Joosten; Thomas Womack; Gert Vriend; Gérard Bricogne
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20

8.  Interplay of catalytic subsite residues in the positioning of α-d-glucose 1-phosphate in sucrose phosphorylase.

Authors:  Patricia Wildberger; Gaia A Aish; David L Jakeman; Lothar Brecker; Bernd Nidetzky
Journal:  Biochem Biophys Rep       Date:  2015-04-17
  8 in total

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