Literature DB >> 29095151

The N253F mutant structure of trehalose synthase from Deinococcus radiodurans reveals an open active-site topology.

Sih Yao Chow1, Yung Lin Wang1, Yu Chiao Hsieh1, Guan Chiun Lee2, Shwu Huey Liaw1.   

Abstract

Trehalose synthase (TS) catalyzes the reversible conversion of maltose to trehalose and belongs to glycoside hydrolase family 13 (GH13). Previous mechanistic analysis suggested a rate-limiting protein conformational change, which is probably the opening and closing of the active site. Consistently, crystal structures of Deinococcus radiodurans TS (DrTS) in complex with the inhibitor Tris displayed an enclosed active site for catalysis of the intramoleular isomerization. In this study, the apo structure of the DrTS N253F mutant displays a new open conformation with an empty active site. Analysis of these structures suggests that substrate binding induces a domain rotation to close the active site. Such a substrate-induced domain rotation has also been observed in some other GH13 enzymes.

Entities:  

Keywords:  X-ray crystallography; conformational change; domain rotation; enzyme mechanism; glycoside hydrolase family 13; trehalose synthase

Mesh:

Substances:

Year:  2017        PMID: 29095151      PMCID: PMC5683027          DOI: 10.1107/S2053230X17014303

Source DB:  PubMed          Journal:  Acta Crystallogr F Struct Biol Commun        ISSN: 2053-230X            Impact factor:   1.056


  30 in total

1.  Role of the C-terminal domain of Thermus thermophilus trehalose synthase in the thermophilicity, thermostability, and efficient production of trehalose.

Authors:  Jia-Hung Wang; Meng-Yin Tsai; Jen-Jye Chen; Guan-Chiun Lee; Jei-Fu Shaw
Journal:  J Agric Food Chem       Date:  2007-03-30       Impact factor: 5.279

2.  Steric hindrance by 2 amino acid residues determines the substrate specificity of isomaltase from Saccharomyces cerevisiae.

Authors:  Keizo Yamamoto; Hideo Miyake; Masami Kusunoki; Shigeyoshi Osaki
Journal:  J Biosci Bioeng       Date:  2011-09-16       Impact factor: 2.894

Review 3.  Trehalose: current use and future applications.

Authors:  Satoshi Ohtake; Y John Wang
Journal:  J Pharm Sci       Date:  2011-02-18       Impact factor: 3.534

Review 4.  Trehalose production: exploiting novel approaches.

Authors:  Chiara Schiraldi; Isabella Di Lernia; Mario De Rosa
Journal:  Trends Biotechnol       Date:  2002-10       Impact factor: 19.536

5.  Structural analysis of the α-glucosidase HaG provides new insights into substrate specificity and catalytic mechanism.

Authors:  Xing Shen; Wataru Saburi; Zuoqi Gai; Koji Kato; Teruyo Ojima-Kato; Jian Yu; Keisuke Komoda; Yusuke Kido; Hirokazu Matsui; Haruhide Mori; Min Yao
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2015-05-23

6.  Cloning and expression of the trehalose-phosphate phosphatase of Mycobacterium tuberculosis: comparison to the enzyme from Mycobacterium smegmatis.

Authors:  Vineetha Koroth Edavana; Irena Pastuszak; J D Carroll; Prajitha Thampi; Edathera C Abraham; Alan D Elbein
Journal:  Arch Biochem Biophys       Date:  2004-06-15       Impact factor: 4.013

7.  REFMAC5 for the refinement of macromolecular crystal structures.

Authors:  Garib N Murshudov; Pavol Skubák; Andrey A Lebedev; Navraj S Pannu; Roberto A Steiner; Robert A Nicholls; Martyn D Winn; Fei Long; Alexei A Vagin
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-03-18

8.  Insights on the evolution of trehalose biosynthesis.

Authors:  Nelson Avonce; Alfredo Mendoza-Vargas; Enrique Morett; Gabriel Iturriaga
Journal:  BMC Evol Biol       Date:  2006-12-19       Impact factor: 3.260

9.  Structures of trehalose synthase from Deinococcus radiodurans reveal that a closed conformation is involved in catalysis of the intramolecular isomerization.

Authors:  Yung Lin Wang; Sih Yao Chow; Yi Ting Lin; Yu Chiao Hsieh; Guan Chiun Lee; Shwu Huey Liaw
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2014-11-22

10.  MolProbity: all-atom structure validation for macromolecular crystallography.

Authors:  Vincent B Chen; W Bryan Arendall; Jeffrey J Headd; Daniel A Keedy; Robert M Immormino; Gary J Kapral; Laura W Murray; Jane S Richardson; David C Richardson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-12-21
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