Literature DB >> 18564915

Meeting report: the fifth Genomic Standards Consortium (GSC) workshop.

Dawn Field1, George M Garrity, Susanna-Assunta Sansone, Peter Sterk, Tanya Gray, Nikos Kyrpides, Lynette Hirschman, Frank Oliver Glöckner, Renzo Kottmann, Sam Angiuoli, Owen White, Peter Dawyndt, Nick Thomson, Inigo San Gil, Norman Morrison, Tatiana Tatusova, Ilene Mizrachi, Robert Vaughan, Guy Cochrane, Leonid Kagan, Sean Murphy, Lynn Schriml.   

Abstract

This meeting report summarizes the proceedings of the fifth Genomic Standards Consortium (GSC) workshop held December 12-14, 2007, at the European Bioinformatics Institute (EBI), Cambridge, UK. This fifth workshop served as a milestone event in the evolution of the GSC (launched in September 2005); the key outcome of the workshop was the finalization of a stable version of the MIGS specification (v2.0) for publication. This accomplishment enables, and also in some cases necessitates, downstream activities, which are described in the multiauthor, consensus-driven articles in this special issue of OMICS produced as a direct result of the workshop. This report briefly summarizes the workshop and overviews the special issue. In particular, it aims to explain how the various GSC-led projects are working together to help this community achieve its stated mission of further standardizing the descriptions of genomes and metagenomes and implementing improved mechanisms of data exchange and integration to enable more accurate comparative analyses. Further information about the GSC and its range of activities can be found at http://gensc.org.

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Year:  2008        PMID: 18564915     DOI: 10.1089/omi.2008.A3B3

Source DB:  PubMed          Journal:  OMICS        ISSN: 1536-2310


  13 in total

Review 1.  Standardization and omics science: technical and social dimensions are inseparable and demand symmetrical study.

Authors:  Christina Holmes; Fiona McDonald; Mavis Jones; Vural Ozdemir; Janice E Graham
Journal:  OMICS       Date:  2010-06

2.  A global network of coexisting microbes from environmental and whole-genome sequence data.

Authors:  Samuel Chaffron; Hubert Rehrauer; Jakob Pernthaler; Christian von Mering
Journal:  Genome Res       Date:  2010-05-10       Impact factor: 9.043

3.  Extending Standards for Genomics and Metagenomics Data: A Research Coordination Network for the Genomic Standards Consortium (RCN4GSC).

Authors:  John C Wooley; Dawn Field; Frank-Oliver Glöckner
Journal:  Stand Genomic Sci       Date:  2009-07-20

4.  Meeting Report from the Genomic Standards Consortium (GSC) Workshop 8.

Authors:  Nikos Kyrpides; Dawn Field; Peter Sterk; Renzo Kottmann; Frank Oliver Glöckner; Lynette Hirschman; George M Garrity; Guy Cochrane; John Wooley
Journal:  Stand Genomic Sci       Date:  2010-08-20

5.  Meeting Report from the Genomic Standards Consortium (GSC) Workshop 10.

Authors:  Elizabeth Glass; Folker Meyer; Jack A Gilbert; Dawn Field; Sarah Hunter; Renzo Kottmann; Nikos Kyrpides; Susanna Sansone; Lynn Schriml; Peter Sterk; Owen White; John Wooley
Journal:  Stand Genomic Sci       Date:  2010-12-25

6.  Meeting Report: "Metagenomics, Metadata and Meta-analysis" (M3) Special Interest Group at ISMB 2009.

Authors:  Dawn Field; Iddo Friedberg; Peter Sterk; Renzo Kottmann; Frank Oliver Glöckner; Lynette Hirschman; George M Garrity; Guy Cochrane; John Wooley; Jack Gilbert
Journal:  Stand Genomic Sci       Date:  2009-12-29

7.  Meeting Report: Metagenomics, Metadata and MetaAnalysis (M3) at ISMB 2010.

Authors:  Dawn Field; Susanna Sansone; Edward F Delong; Peter Sterk; Iddo Friedberg; Renzo Kottmann; Lynette Hirschman; George Garrity; Guy Cochrane; John Wooley; Folker Meyer; Sarah Hunter; Owen White
Journal:  Stand Genomic Sci       Date:  2010-12-04

8.  Meeting Report from the Genomic Standards Consortium (GSC) Workshops 6 and 7.

Authors:  Dawn Field; Peter Sterk; Nikos Kyrpides; Renzo Kottmann; Frank Oliver Glöckner; Lynette Hirschman; George M Garrity; John Wooley; Paul Gilna
Journal:  Stand Genomic Sci       Date:  2009-07-20

9.  Meeting Report: "Metagenomics, Metadata and Meta-analysis" (M3) Workshop at the Pacific Symposium on Biocomputing 2010.

Authors:  Lynette Hirschman; Peter Sterk; Dawn Field; John Wooley; Guy Cochrane; Jack Gilbert; Eugene Kolker; Nikos Kyrpides; Folker Meyer; Ilene Mizrachi; Yasukazu Nakamura; Susanna-Assunta Sansone; Lynn Schriml; Tatiana Tatusova; Owen White; Pelin Yilmaz
Journal:  Stand Genomic Sci       Date:  2010-06-15

10.  The role of genomics in the identification, prediction, and prevention of biological threats.

Authors:  W Florian Fricke; David A Rasko; Jacques Ravel
Journal:  PLoS Biol       Date:  2009-10-26       Impact factor: 8.029

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