Literature DB >> 18556760

Regular gaits and optimal velocities for motor proteins.

R E Lee DeVille1, Eric Vanden-Eijnden.   

Abstract

It has been observed in numerical experiments that adding a cargo to a motor protein can regularize its gait. Here we explain these results via asymptotic analysis on a general stochastic motor protein model. This analysis permits a computation of various observables (e.g., the mean velocity) of the motor protein and shows that the presence of the cargo also makes the velocity of the motor nonmonotone in certain control parameters (e.g., ATP concentration). As an example, we consider the case of a single myosin-V protein transporting a cargo and show that, at realistic concentrations of ATP, myosin-V operates in the regime which maximizes motor velocity. Our analysis also suggests an experimental regimen which can test the efficacy of any specific motor protein model to a greater degree than was heretofore possible.

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Year:  2008        PMID: 18556760      PMCID: PMC2527266          DOI: 10.1529/biophysj.108.130674

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  39 in total

1.  Single kinesin molecules studied with a molecular force clamp.

Authors:  K Visscher; M J Schnitzer; S M Block
Journal:  Nature       Date:  1999-07-08       Impact factor: 49.962

2.  A structural change in the kinesin motor protein that drives motility.

Authors:  S Rice; A W Lin; D Safer; C L Hart; N Naber; B O Carragher; S M Cain; E Pechatnikova; E M Wilson-Kubalek; M Whittaker; E Pate; R Cooke; E W Taylor; R A Milligan; R D Vale
Journal:  Nature       Date:  1999-12-16       Impact factor: 49.962

3.  Molecular model of muscle contraction.

Authors:  T A Duke
Journal:  Proc Natl Acad Sci U S A       Date:  1999-03-16       Impact factor: 11.205

4.  A structural state of the myosin V motor without bound nucleotide.

Authors:  Pierre-Damien Coureux; Amber L Wells; Julie Ménétrey; Christopher M Yengo; Carl A Morris; H Lee Sweeney; Anne Houdusse
Journal:  Nature       Date:  2003-09-25       Impact factor: 49.962

5.  Two distinct mechanisms of coherence in randomly perturbed dynamical systems.

Authors:  R E Lee DeVille; Eric Vanden-Eijnden; Cyrill B Muratov
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2005-09-14

6.  A Brownian Dynamics model of kinesin in three dimensions incorporating the force-extension profile of the coiled-coil cargo tether.

Authors:  Paul J Atzberger; Charles S Peskin
Journal:  Bull Math Biol       Date:  2006-02-16       Impact factor: 1.758

7.  Myosin V walks by lever action and Brownian motion.

Authors:  Katsuyuki Shiroguchi; Kazuhiko Kinosita
Journal:  Science       Date:  2007-05-25       Impact factor: 47.728

8.  Force generation in RNA polymerase.

Authors:  H Y Wang; T Elston; A Mogilner; G Oster
Journal:  Biophys J       Date:  1998-03       Impact factor: 4.033

9.  Kinetic mechanism and regulation of myosin VI.

Authors:  E M De La Cruz; E M Ostap; H L Sweeney
Journal:  J Biol Chem       Date:  2001-06-22       Impact factor: 5.157

10.  Myosin VI is a processive motor with a large step size.

Authors:  R S Rock; S E Rice; A L Wells; T J Purcell; J A Spudich; H L Sweeney
Journal:  Proc Natl Acad Sci U S A       Date:  2001-11-13       Impact factor: 11.205

View more
  1 in total

1.  Effective behavior of cooperative and nonidentical molecular motors.

Authors:  Joseph J Klobusicky; John Fricks; Peter R Kramer
Journal:  Res Math Sci       Date:  2020-09-21
  1 in total

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