Literature DB >> 18551728

Computer model for glucose-limited growth of a single cell of Escherichia coli B/r-A.

M M Domach1, S K Leung, R E Cahn, G G Cocks, M L Shuler.   

Abstract

A computer model is described which is capable of predicting changes in cell composition, cell size, cell shape, and the timing of chromosome synthesis in response to changes in external glucose limitation. The model is constructed primarily from information on unrestricted growth in glucose minimal medium. The ability of the model to make reasonable quantitative predictions under glucose-limitation is a test of the plausibility of the basic biochemical mechanisms included in the model. Such a model should be of use in differentiating among competing hypotheses for biological mechanisms and in suggesting as yet unobserved phenomena. The last two points are illustrated with the testing of a mechanism for the control of the initiation of DNA synthesis and predictions on cellwidth variations during the division cycle.

Entities:  

Year:  1984        PMID: 18551728     DOI: 10.1002/bit.260260303

Source DB:  PubMed          Journal:  Biotechnol Bioeng        ISSN: 0006-3592            Impact factor:   4.530


  11 in total

1.  Computation, prediction, and experimental tests of fitness for bacteriophage T7 mutants with permuted genomes.

Authors:  D Endy; L You; J Yin; I J Molineux
Journal:  Proc Natl Acad Sci U S A       Date:  2000-05-09       Impact factor: 11.205

Review 2.  In Silico Constraint-Based Strain Optimization Methods: the Quest for Optimal Cell Factories.

Authors:  Paulo Maia; Miguel Rocha; Isabel Rocha
Journal:  Microbiol Mol Biol Rev       Date:  2015-11-25       Impact factor: 11.056

Review 3.  Quantification of control of microbial metabolism by substrates and enzymes.

Authors:  K van Dam; N Jansen
Journal:  Antonie Van Leeuwenhoek       Date:  1991 Oct-Nov       Impact factor: 2.271

4.  Quantitation of microbial metabolism.

Authors:  B Sonnleitner
Journal:  Antonie Van Leeuwenhoek       Date:  1991 Oct-Nov       Impact factor: 2.271

Review 5.  Modeling of cell culture processes.

Authors:  E Tziampazis; A Sambanis
Journal:  Cytotechnology       Date:  1994       Impact factor: 2.058

6.  A community model of ciliate Tetrahymena and bacteria E. coli: Part I. individual-based models of tetrahymena and E. coli populations.

Authors:  J S Jaworska; T G Hallam; T W Schultz
Journal:  Bull Math Biol       Date:  1996-03       Impact factor: 1.758

Review 7.  Computing the functional proteome: recent progress and future prospects for genome-scale models.

Authors:  Edward J O'Brien; Bernhard O Palsson
Journal:  Curr Opin Biotechnol       Date:  2015-01-08       Impact factor: 9.740

8.  A modular minimal cell model: purine and pyrimidine transport and metabolism.

Authors:  M Castellanos; D B Wilson; M L Shuler
Journal:  Proc Natl Acad Sci U S A       Date:  2004-04-16       Impact factor: 11.205

Review 9.  Genome-based Modeling and Design of Metabolic Interactions in Microbial Communities.

Authors:  Radhakrishnan Mahadevan; Michael A Henson
Journal:  Comput Struct Biotechnol J       Date:  2012-11-12       Impact factor: 7.271

10.  A coarse-grained biophysical model of E. coli and its application to perturbation of the rRNA operon copy number.

Authors:  Arbel D Tadmor; Tsvi Tlusty
Journal:  PLoS Comput Biol       Date:  2008-05-02       Impact factor: 4.475

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