Literature DB >> 16689644

Cryo-electron microscopy of spliceosomal components.

Holger Stark1, Reinhard Lührmann.   

Abstract

Splicing is an essential step of gene expression in which introns are removed from pre-mRNA to generate mature mRNA that can be translated by the ribosome. This reaction is catalyzed by a large and dynamic macromolecular RNP complex called the spliceosome. The spliceosome is formed by the stepwise integration of five snRNPs composed of U1, U2, U4, U5, and U6 snRNAs and more than 150 proteins binding sequentially to pre-mRNA. To study the structure of this particularly dynamic RNP machine that undergoes many changes in composition and conformation, single-particle cryo-electron microscopy (cryo-EM) is currently the method of choice. In this review, we present the results of these cryo-EM studies along with some new perspectives on structural and functional aspects of splicing, and we outline the perspectives and limitations of the cryo-EM technique in obtaining structural information about macromolecular complexes, such as the spliceosome, involved in splicing.

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Year:  2006        PMID: 16689644     DOI: 10.1146/annurev.biophys.35.040405.101953

Source DB:  PubMed          Journal:  Annu Rev Biophys Biomol Struct        ISSN: 1056-8700


  48 in total

1.  Antisense-targeted immuno-EM localization of the pre-mRNA path in the spliceosomal C complex.

Authors:  Elmar Wolf; Berthold Kastner; Reinhard Lührmann
Journal:  RNA       Date:  2012-05-24       Impact factor: 4.942

2.  Protein localisation by electron microscopy reveals the architecture of the yeast spliceosomal B complex.

Authors:  Norbert Rigo; Chengfu Sun; Patrizia Fabrizio; Berthold Kastner; Reinhard Lührmann
Journal:  EMBO J       Date:  2015-11-18       Impact factor: 11.598

3.  Visualizing the splicing of single pre-mRNA molecules in whole cell extract.

Authors:  Daniel J Crawford; Aaron A Hoskins; Larry J Friedman; Jeff Gelles; Melissa J Moore
Journal:  RNA       Date:  2007-11-19       Impact factor: 4.942

4.  Affinity and specificity of protein U1A-RNA complex formation based on an additive component free energy model.

Authors:  Bethany L Kormos; Yulia Benitex; Anne M Baranger; David L Beveridge
Journal:  J Mol Biol       Date:  2007-06-09       Impact factor: 5.469

Review 5.  Evolutionary diversification of the Sm family of RNA-associated proteins.

Authors:  Douglas G Scofield; Michael Lynch
Journal:  Mol Biol Evol       Date:  2008-08-07       Impact factor: 16.240

6.  Exon, intron and splice site locations in the spliceosomal B complex.

Authors:  Elmar Wolf; Berthold Kastner; Jochen Deckert; Christian Merz; Holger Stark; Reinhard Lührmann
Journal:  EMBO J       Date:  2009-06-18       Impact factor: 11.598

Review 7.  "Nought may endure but mutability": spliceosome dynamics and the regulation of splicing.

Authors:  Duncan J Smith; Charles C Query; Maria M Konarska
Journal:  Mol Cell       Date:  2008-06-20       Impact factor: 17.970

8.  Maximum likelihood refinement of electron microscopy data with normalization errors.

Authors:  Sjors H W Scheres; Mikel Valle; Patricia Grob; Eva Nogales; José-María Carazo
Journal:  J Struct Biol       Date:  2009-02-21       Impact factor: 2.867

9.  Nucleic acid structure characterization by small angle X-ray scattering (SAXS).

Authors:  Jordan E Burke; Samuel E Butcher
Journal:  Curr Protoc Nucleic Acid Chem       Date:  2012-12

Review 10.  Alternative splicing and disease.

Authors:  Jamal Tazi; Nadia Bakkour; Stefan Stamm
Journal:  Biochim Biophys Acta       Date:  2008-10-17
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