Literature DB >> 18550083

An ensemble of models of the acute inflammatory response to bacterial lipopolysaccharide in rats: results from parameter space reduction.

Silvia Daun1, Jonathan Rubin, Yoram Vodovotz, Anirban Roy, Robert Parker, Gilles Clermont.   

Abstract

In previous work, we developed an 8-state nonlinear dynamic model of the acute inflammatory response, including activated phagocytic cells, pro- and anti-inflammatory cytokines, and tissue damage, and calibrated it to data on cytokines from endotoxemic rats. In the interest of parsimony, the present work employed parametric sensitivity and local identifiability analysis to establish a core set of parameters predominantly responsible for variability in model solutions. Parameter optimization, facilitated by varying only those parameters belonging to this core set, was used to identify an ensemble of parameter vectors, each representing an acceptable local optimum in terms of fit to experimental data. Individual models within this ensemble, characterized by their different parameter values, showed similar cytokine but diverse tissue damage behavior. A cluster analysis of the ensemble of models showed the existence of a continuum of acceptable models, characterized by compensatory mechanisms and parameter changes. We calculated the direct correlations between the core set of model parameters and identified three mechanisms responsible for the conversion of the diverse damage time courses to similar cytokine behavior in these models. Given that tissue damage level could be an indicator of the likelihood of mortality, our findings suggest that similar cytokine dynamics could be associated with very different mortality outcomes, depending on the balance of certain inflammatory elements.

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Year:  2008        PMID: 18550083     DOI: 10.1016/j.jtbi.2008.04.033

Source DB:  PubMed          Journal:  J Theor Biol        ISSN: 0022-5193            Impact factor:   2.691


  28 in total

Review 1.  Translational systems approaches to the biology of inflammation and healing.

Authors:  Yoram Vodovotz; Gregory Constantine; James Faeder; Qi Mi; Jonathan Rubin; John Bartels; Joydeep Sarkar; Robert H Squires; David O Okonkwo; Jörg Gerlach; Ruben Zamora; Shirley Luckhart; Bard Ermentrout; Gary An
Journal:  Immunopharmacol Immunotoxicol       Date:  2010-06       Impact factor: 2.730

2.  A two-compartment mathematical model of endotoxin-induced inflammatory and physiologic alterations in swine.

Authors:  Gary Nieman; David Brown; Joydeep Sarkar; Brian Kubiak; Cordelia Ziraldo; Joyeeta Dutta-Moscato; Christopher Vieau; Derek Barclay; Louis Gatto; Kristopher Maier; Gregory Constantine; Timothy R Billiar; Ruben Zamora; Qi Mi; Steve Chang; Yoram Vodovotz
Journal:  Crit Care Med       Date:  2012-04       Impact factor: 7.598

3.  Inflammation and Disease: Modelling and Modulation of the Inflammatory Response to Alleviate Critical Illness.

Authors:  Judy D Day; Chase Cockrell; Rami Namas; Ruben Zamora; Gary An; Yoram Vodovotz
Journal:  Curr Opin Syst Biol       Date:  2018-08-23

Review 4.  Biomedical engineering strategies in system design space.

Authors:  Michael A Savageau
Journal:  Ann Biomed Eng       Date:  2011-01-04       Impact factor: 3.934

Review 5.  Sepsis: from pattern to mechanism and back.

Authors:  Gary An; Rami A Namas; Yoram Vodovotz
Journal:  Crit Rev Biomed Eng       Date:  2012

6.  Competition Between Transients in the Rate of Approach to a Fixed Point.

Authors:  Judy Day; Jonathan E Rubin; Carson C Chow
Journal:  SIAM J Appl Dyn Syst       Date:  2009-11-20       Impact factor: 2.316

7.  A mathematical model of pulmonary gas exchange under inflammatory stress.

Authors:  Angela Reynolds; G Bard Ermentrout; Gilles Clermont
Journal:  J Theor Biol       Date:  2010-01-18       Impact factor: 2.691

8.  Mathematical modeling of energy consumption in the acute inflammatory response.

Authors:  Ivan Ramirez-Zuniga; Jonathan E Rubin; David Swigon; Gilles Clermont
Journal:  J Theor Biol       Date:  2018-08-25       Impact factor: 2.691

Review 9.  Systems engineering medicine: engineering the inflammation response to infectious and traumatic challenges.

Authors:  Robert S Parker; Gilles Clermont
Journal:  J R Soc Interface       Date:  2010-02-10       Impact factor: 4.118

Review 10.  Translational applications of evaluating physiologic variability in human endotoxemia.

Authors:  Jeremy D Scheff; Panteleimon D Mavroudis; Steve E Calvano; Ioannis P Androulakis
Journal:  J Clin Monit Comput       Date:  2012-12-01       Impact factor: 2.502

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