Literature DB >> 18549244

A second conserved GAF domain cysteine is required for the blue/green photoreversibility of cyanobacteriochrome Tlr0924 from Thermosynechococcus elongatus.

Nathan C Rockwell1, Stephanie Lane Njuguna, Laurel Roberts, Elenor Castillo, Victoria L Parson, Sunshine Dwojak, J Clark Lagarias, Susan C Spiller.   

Abstract

Phytochromes are widely occurring red/far-red photoreceptors that utilize a linear tetrapyrrole (bilin) chromophore covalently bound within a knotted PAS-GAF domain pair. Cyanobacteria also contain more distant relatives of phytochromes that lack this knot, such as the phytochrome-related cyanobacteriochromes implicated to function as blue/green switchable photoreceptors. In this study, we characterize the cyanobacteriochrome Tlr0924 from the thermophilic cyanobacterium Thermosynechococcus elongatus. Full-length Tlr0924 exhibits blue/green photoconversion across a broad range of temperatures, including physiologically relevant temperatures for this organism. Spectroscopic characterization of Tlr0924 demonstrates that its green-absorbing state is in equilibrium with a labile, spectrally distinct blue-absorbing species. The photochemically generated blue-absorbing state is in equilibrium with another species absorbing at longer wavelengths, giving a total of 4 states. Cys499 is essential for this behavior, because mutagenesis of this residue results in red-absorbing mutant biliproteins. Characterization of the C 499D mutant protein by absorbance and CD spectroscopy supports the conclusion that its bilin chromophore adopts a similar conformation to the red-light-absorbing P r form of phytochrome. We propose a model photocycle in which Z/ E photoisomerization of the 15/16 bond modulates formation of a reversible thioether linkage between Cys499 and C10 of the chromophore, providing the basis for the blue/green switching of cyanobacteriochromes.

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Year:  2008        PMID: 18549244      PMCID: PMC2574597          DOI: 10.1021/bi800088t

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  55 in total

1.  Defining the bilin lyase domain: lessons from the extended phytochrome superfamily.

Authors:  S H Wu; J C Lagarias
Journal:  Biochemistry       Date:  2000-11-07       Impact factor: 3.162

2.  Genetic engineering of phytochrome biosynthesis in bacteria.

Authors:  G A Gambetta; J C Lagarias
Journal:  Proc Natl Acad Sci U S A       Date:  2001-09-11       Impact factor: 11.205

3.  Single-reference ab initio methods for the calculation of excited states of large molecules.

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Review 4.  Advances in methods and algorithms in a modern quantum chemistry program package.

Authors:  Yihan Shao; Laszlo Fusti Molnar; Yousung Jung; Jörg Kussmann; Christian Ochsenfeld; Shawn T Brown; Andrew T B Gilbert; Lyudmila V Slipchenko; Sergey V Levchenko; Darragh P O'Neill; Robert A DiStasio; Rohini C Lochan; Tao Wang; Gregory J O Beran; Nicholas A Besley; John M Herbert; Ching Yeh Lin; Troy Van Voorhis; Siu Hung Chien; Alex Sodt; Ryan P Steele; Vitaly A Rassolov; Paul E Maslen; Prakashan P Korambath; Ross D Adamson; Brian Austin; Jon Baker; Edward F C Byrd; Holger Dachsel; Robert J Doerksen; Andreas Dreuw; Barry D Dunietz; Anthony D Dutoi; Thomas R Furlani; Steven R Gwaltney; Andreas Heyden; So Hirata; Chao-Ping Hsu; Gary Kedziora; Rustam Z Khalliulin; Phil Klunzinger; Aaron M Lee; Michael S Lee; Wanzhen Liang; Itay Lotan; Nikhil Nair; Baron Peters; Emil I Proynov; Piotr A Pieniazek; Young Min Rhee; Jim Ritchie; Edina Rosta; C David Sherrill; Andrew C Simmonett; Joseph E Subotnik; H Lee Woodcock; Weimin Zhang; Alexis T Bell; Arup K Chakraborty; Daniel M Chipman; Frerich J Keil; Arieh Warshel; Warren J Hehre; Henry F Schaefer; Jing Kong; Anna I Krylov; Peter M W Gill; Martin Head-Gordon
Journal:  Phys Chem Chem Phys       Date:  2006-06-12       Impact factor: 3.676

5.  Crystal structure of the chromophore binding domain of an unusual bacteriophytochrome, RpBphP3, reveals residues that modulate photoconversion.

Authors:  Xiaojing Yang; Emina A Stojkovic; Jane Kuk; Keith Moffat
Journal:  Proc Natl Acad Sci U S A       Date:  2007-07-17       Impact factor: 11.205

6.  Cyanobacteriochrome TePixJ of Thermosynechococcus elongatus harbors phycoviolobilin as a chromophore.

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Journal:  Plant Cell Physiol       Date:  2007-08-22       Impact factor: 4.927

7.  Using CLUSTAL for multiple sequence alignments.

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8.  Photochromic biliproteins from the cyanobacterium Anabaena sp. PCC 7120: lyase activities, chromophore exchange, and photochromism in phytochrome AphA.

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Journal:  Biochemistry       Date:  2004-09-14       Impact factor: 3.162

9.  Inactivation of phytochrome- and phycobiliprotein-chromophore precursors by rat liver biliverdin reductase.

Authors:  M J Terry; M D Maines; J C Lagarias
Journal:  J Biol Chem       Date:  1993-12-15       Impact factor: 5.157

Review 10.  The structure of phytochrome: a picture is worth a thousand spectra.

Authors:  Nathan C Rockwell; J Clark Lagarias
Journal:  Plant Cell       Date:  2006-01       Impact factor: 11.277

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  49 in total

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Journal:  Proc Natl Acad Sci U S A       Date:  2020-06-26       Impact factor: 11.205

2.  Temperature-scan cryocrystallography reveals reaction intermediates in bacteriophytochrome.

Authors:  Xiaojing Yang; Zhong Ren; Jane Kuk; Keith Moffat
Journal:  Nature       Date:  2011-10-16       Impact factor: 49.962

3.  Tightening the knot in phytochrome by single-molecule atomic force microscopy.

Authors:  Thomas Bornschlögl; David M Anstrom; Elisabeth Mey; Joachim Dzubiella; Matthias Rief; Katrina T Forest
Journal:  Biophys J       Date:  2009-02-18       Impact factor: 4.033

4.  Distinct classes of red/far-red photochemistry within the phytochrome superfamily.

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5.  Control of a four-color sensing photoreceptor by a two-color sensing photoreceptor reveals complex light regulation in cyanobacteria.

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6.  Near-UV cyanobacteriochrome signaling system elicits negative phototaxis in the cyanobacterium Synechocystis sp. PCC 6803.

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Journal:  Proc Natl Acad Sci U S A       Date:  2011-06-13       Impact factor: 11.205

7.  Biosynthesis of cyanobacterial phycobiliproteins in Escherichia coli: chromophorylation efficiency and specificity of all bilin lyases from Synechococcus sp. strain PCC 7002.

Authors:  Avijit Biswas; Yasmin M Vasquez; Tierna M Dragomani; Monica L Kronfel; Shervonda R Williams; Richard M Alvey; Donald A Bryant; Wendy M Schluchter
Journal:  Appl Environ Microbiol       Date:  2010-03-12       Impact factor: 4.792

8.  Diverse two-cysteine photocycles in phytochromes and cyanobacteriochromes.

Authors:  Nathan C Rockwell; Shelley S Martin; Kateryna Feoktistova; J Clark Lagarias
Journal:  Proc Natl Acad Sci U S A       Date:  2011-06-28       Impact factor: 11.205

9.  Phototaxis in a wild isolate of the cyanobacterium Synechococcus elongatus.

Authors:  Yiling Yang; Vinson Lam; Marie Adomako; Ryan Simkovsky; Annik Jakob; Nathan C Rockwell; Susan E Cohen; Arnaud Taton; Jingtong Wang; J Clark Lagarias; Annegret Wilde; David R Nobles; Jerry J Brand; Susan S Golden
Journal:  Proc Natl Acad Sci U S A       Date:  2018-12-14       Impact factor: 11.205

10.  Genomic structure of an economically important cyanobacterium, Arthrospira (Spirulina) platensis NIES-39.

Authors:  Takatomo Fujisawa; Rei Narikawa; Shinobu Okamoto; Shigeki Ehira; Hidehisa Yoshimura; Iwane Suzuki; Tatsuru Masuda; Mari Mochimaru; Shinichi Takaichi; Koichiro Awai; Mitsuo Sekine; Hiroshi Horikawa; Isao Yashiro; Seiha Omata; Hiromi Takarada; Yoko Katano; Hiroki Kosugi; Satoshi Tanikawa; Kazuko Ohmori; Naoki Sato; Masahiko Ikeuchi; Nobuyuki Fujita; Masayuki Ohmori
Journal:  DNA Res       Date:  2010-03-04       Impact factor: 4.458

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