Literature DB >> 18547527

Integrin conformational regulation: uncoupling extension/tail separation from changes in the head region by a multiresolution approach.

Mattia Rocco1, Camillo Rosano, John W Weisel, David A Horita, Roy R Hantgan.   

Abstract

Integrin-dependent adhesion and signaling are regulated by conformational changes whose details remain controversial. Crystallography revealed bent shapes for resting and primed integrin ectodomains, whereas large, ligand-induced rearrangements in other constructs suggested extension, "opening," and tail separation. We have used experimental/computed hydrodynamics to discriminate among different alpha(v)beta(3) and alpha(IIb)beta(3) atomic models built on X-ray, NMR, and EM data. In contrast with X-ray structures and EM maps, hydrodynamics indicate that resting integrins are already extended. Furthermore, the hydrodynamics of an alpha(v)beta(3) ectodomain-fibronectin fragment complex support opening via additional head region conformational changes (hybrid domain swing-out), but without tail separation. Likewise, frictional changes induced by priming agents in full-length alpha(IIb)beta(3) correlate well with the swing-out coupled to a simple transmembrane helix shift in an extended, electron tomography-based model. Extension and immediate tail separation are then uncoupled from head region rearrangements following activation, thus underscoring integrins' delicate, finely tuned plasticity.

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Year:  2008        PMID: 18547527      PMCID: PMC2848535          DOI: 10.1016/j.str.2008.02.019

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  54 in total

1.  A structural basis for integrin activation by the cytoplasmic tail of the alpha IIb-subunit.

Authors:  O Vinogradova; T Haas; E F Plow; J Qin
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2.  Effects of ligand-mimetic peptides Arg-Gly-Asp-X (X = Phe, Trp, Ser) on alphaIIbbeta3 integrin conformation and oligomerization.

Authors:  R R Hantgan; C Paumi; M Rocco; J W Weisel
Journal:  Biochemistry       Date:  1999-11-02       Impact factor: 3.162

3.  Multi-resolution contour-based fitting of macromolecular structures.

Authors:  Pablo Chacón; Willy Wriggers
Journal:  J Mol Biol       Date:  2002-03-29       Impact factor: 5.469

4.  The disintegrin echistatin stabilizes integrin alphaIIbbeta3's open conformation and promotes its oligomerization.

Authors:  Roy R Hantgan; Mary C Stahle; John H Connor; Douglas S Lyles; David A Horita; Mattia Rocco; Chandrasekaran Nagaswami; John W Weisel; Mary Ann McLane
Journal:  J Mol Biol       Date:  2004-10-01       Impact factor: 5.469

5.  WHAT IF: a molecular modeling and drug design program.

Authors:  G Vriend
Journal:  J Mol Graph       Date:  1990-03

6.  Functional modes of proteins are among the most robust.

Authors:  S Nicolay; Y-H Sanejouand
Journal:  Phys Rev Lett       Date:  2006-02-24       Impact factor: 9.161

7.  Structure of integrin alpha5beta1 in complex with fibronectin.

Authors:  Junichi Takagi; Konstantin Strokovich; Timothy A Springer; Thomas Walz
Journal:  EMBO J       Date:  2003-09-15       Impact factor: 11.598

8.  Binding of a fibrinogen mimetic stabilizes integrin alphaIIbbeta3's open conformation.

Authors:  R R Hantgan; M Rocco; C Nagaswami; J W Weisel
Journal:  Protein Sci       Date:  2001-08       Impact factor: 6.725

9.  2.0 A crystal structure of a four-domain segment of human fibronectin encompassing the RGD loop and synergy region.

Authors:  D J Leahy; I Aukhil; H P Erickson
Journal:  Cell       Date:  1996-01-12       Impact factor: 41.582

10.  Electron microscopy and structural model of human fibronectin receptor.

Authors:  M V Nermut; N M Green; P Eason; S S Yamada; K M Yamada
Journal:  EMBO J       Date:  1988-12-20       Impact factor: 11.598

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  22 in total

1.  Effects of limiting extension at the alphaIIb genu on ligand binding to integrin alphaIIbbeta3.

Authors:  Robert Blue; Jihong Li; Jonathan Steinberger; Marta Murcia; Marta Filizola; Barry S Coller
Journal:  J Biol Chem       Date:  2010-04-02       Impact factor: 5.157

2.  The structure of the integrin alphaIIbbeta3 transmembrane complex explains integrin transmembrane signalling.

Authors:  Tong-Lay Lau; Chungho Kim; Mark H Ginsberg; Tobias S Ulmer
Journal:  EMBO J       Date:  2009-03-12       Impact factor: 11.598

Review 3.  Linking integrin conformation to function.

Authors:  Janet A Askari; Patrick A Buckley; A Paul Mould; Martin J Humphries
Journal:  J Cell Sci       Date:  2009-01-15       Impact factor: 5.285

Review 4.  The GPIIb/IIIa (integrin alphaIIbbeta3) odyssey: a technology-driven saga of a receptor with twists, turns, and even a bend.

Authors:  Barry S Coller; Sanford J Shattil
Journal:  Blood       Date:  2008-10-15       Impact factor: 22.113

5.  Intact alphaIIbbeta3 integrin is extended after activation as measured by solution X-ray scattering and electron microscopy.

Authors:  Edward T Eng; Benoit J Smagghe; Thomas Walz; Timothy A Springer
Journal:  J Biol Chem       Date:  2011-08-09       Impact factor: 5.157

6.  Computing translational diffusion and sedimentation coefficients: an evaluation of experimental data and programs.

Authors:  Mattia Rocco; Olwyn Byron
Journal:  Eur Biophys J       Date:  2015-06-12       Impact factor: 1.733

7.  The implementation of SOMO (SOlution MOdeller) in the UltraScan analytical ultracentrifugation data analysis suite: enhanced capabilities allow the reliable hydrodynamic modeling of virtually any kind of biomacromolecule.

Authors:  Emre Brookes; Borries Demeler; Camillo Rosano; Mattia Rocco
Journal:  Eur Biophys J       Date:  2009-02-21       Impact factor: 1.733

8.  PROBING αIIbβ3: LIGAND INTERACTIONS BY DYNAMIC FORCE SPECTROSCOPY AND SURFACE PLASMON RESONANCE.

Authors:  Roy R Hantgan; Martin Guthold; Samrat Dutta; David A Horita
Journal:  Nano Life       Date:  2013

9.  Focal adhesions are sites of integrin extension.

Authors:  Janet A Askari; Christopher J Tynan; Stephen E D Webb; Marisa L Martin-Fernandez; Christoph Ballestrem; Martin J Humphries
Journal:  J Cell Biol       Date:  2010-03-15       Impact factor: 10.539

10.  Crystal structure of the complete integrin alphaVbeta3 ectodomain plus an alpha/beta transmembrane fragment.

Authors:  Jian-Ping Xiong; Bhuvaneshwari Mahalingham; Jose Luis Alonso; Laura Ann Borrelli; Xianliang Rui; Saurabh Anand; Bradley T Hyman; Thomas Rysiok; Dirk Müller-Pompalla; Simon L Goodman; M Amin Arnaout
Journal:  J Cell Biol       Date:  2009-08-24       Impact factor: 10.539

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