Literature DB >> 18543033

Use of Radcube for extraction of finding trends in a large radiology practice.

Pragya A Dang1, Mannudeep K Kalra, Michael A Blake, Thomas J Schultz, Markus Stout, Elkan F Halpern, Keith J Dreyer.   

Abstract

The purpose of our study was to demonstrate the use of Natural Language Processing (Leximer), along with Online Analytic Processing, (NLP-OLAP), for extraction of finding trends in a large radiology practice. Prior studies have validated the Natural Language Processing (NLP) program, Leximer for classifying unstructured radiology reports based on the presence of positive radiology findings (F (POS)) and negative radiology findings (F (NEG)). The F (POS) included new relevant radiology findings and any change in status from prior imaging. Electronic radiology reports from 1995-2002 and data from analysis of these reports with NLP-Leximer were saved in a data warehouse and exported to a multidimensional structure called the Radcube. Various relational queries on the data in the Radcube were performed using OLAP technique. Thus, NLP-OLAP was applied to determine trends of F (POS) in different radiology exams for different patient and examination attributes. Pivot tables were exported from NLP-OLAP interface to Microsoft Excel for statistical analysis. Radcube allowed rapid and comprehensive analysis of F (POS) and F (NEG) trends in a large radiology report database. Trends of F (POS) were extracted for different patient attributes such as age groups, gender, clinical indications, diseases with ICD codes, patient types (inpatient, ambulatory), imaging characteristics such as imaging modalities, referring physicians, radiology subspecialties, and body regions. Data analysis showed substantial differences between F (POS) rates for different imaging modalities ranging from 23.1% (mammography, 49,163/212,906) to 85.8% (nuclear medicine, 93,852/109,374; p < 0.0001). In conclusion, NLP-OLAP can help in analysis of yield of different radiology exams from a large radiology report database.

Entities:  

Mesh:

Year:  2008        PMID: 18543033      PMCID: PMC3043736          DOI: 10.1007/s10278-008-9128-x

Source DB:  PubMed          Journal:  J Digit Imaging        ISSN: 0897-1889            Impact factor:   4.056


  27 in total

1.  Application of recently developed computer algorithm for automatic classification of unstructured radiology reports: validation study.

Authors:  Keith J Dreyer; Mannudeep K Kalra; Michael M Maher; Autumn M Hurier; Benjamin A Asfaw; Thomas Schultz; Elkan F Halpern; James H Thrall
Journal:  Radiology       Date:  2004-12-10       Impact factor: 11.105

2.  Large-scale quantitative proteomic study of PUMA-induced apoptosis using two-dimensional liquid chromatography-mass spectrometry coupled with amino acid-coded mass tagging.

Authors:  Sheng Gu; Yuchun Du; Jin Chen; Zhihe Liu; E Morton Bradbury; Chien-An A Hu; Xian Chen
Journal:  J Proteome Res       Date:  2004 Nov-Dec       Impact factor: 4.466

3.  Health, technology, and medical care spending.

Authors:  James Lubitz
Journal:  Health Aff (Millwood)       Date:  2005       Impact factor: 6.301

4.  Inpatient radiology utilization: trends over the past decade.

Authors:  Amin Matin; David W Bates; Andrew Sussman; Pablo Ros; Richard Hanson; Ramin Khorasani
Journal:  AJR Am J Roentgenol       Date:  2006-01       Impact factor: 3.959

5.  Electronic data processing: the pathway to automated quality control of cardiopulmonary bypass.

Authors:  R F Newland; R A Baker; R Stanley
Journal:  J Extra Corpor Technol       Date:  2006-06

6.  Colorectal cancer treated at Christchurch Hospital, New Zealand: a comparison of 1993 and 1998 cohorts.

Authors:  Bridget Robinson; Frank Frizelle; Michelle Dickson; Chris Frampton
Journal:  N Z Med J       Date:  2005-02-25

7.  Analysis of factors contributing to 674 agricultural driveline-related injuries and fatalities documented between 1970 to 2003.

Authors:  Shane R Beer; William E Field
Journal:  J Agromedicine       Date:  2005       Impact factor: 1.675

8.  BioWarehouse: a bioinformatics database warehouse toolkit.

Authors:  Thomas J Lee; Yannick Pouliot; Valerie Wagner; Priyanka Gupta; David W J Stringer-Calvert; Jessica D Tenenbaum; Peter D Karp
Journal:  BMC Bioinformatics       Date:  2006-03-23       Impact factor: 3.169

9.  A decade of change in abdominal aortic aneurysm repair in the United States: Have we improved outcomes equally between men and women?

Authors:  Ellen D Dillavou; Satish C Muluk; Michel S Makaroun
Journal:  J Vasc Surg       Date:  2006-02       Impact factor: 4.268

10.  Atlas - a data warehouse for integrative bioinformatics.

Authors:  Sohrab P Shah; Yong Huang; Tao Xu; Macaire M S Yuen; John Ling; B F Francis Ouellette
Journal:  BMC Bioinformatics       Date:  2005-02-21       Impact factor: 3.169

View more
  5 in total

1.  Cross-sectional relatedness between sentences in breast radiology reports: development of an SVM classifier and evaluation against annotations of five breast radiologists.

Authors:  Merlijn Sevenster; Yuechen Qian; Hiroyuki Abe; Johannes Buurman
Journal:  J Digit Imaging       Date:  2013-10       Impact factor: 4.056

2.  Automatically pairing measured findings across narrative abdomen CT reports.

Authors:  Merlijn Sevenster; Jeffrey Bozeman; Andrea Cowhy; William Trost
Journal:  AMIA Annu Symp Proc       Date:  2013-11-16

Review 3.  Machine learning and radiology.

Authors:  Shijun Wang; Ronald M Summers
Journal:  Med Image Anal       Date:  2012-02-23       Impact factor: 8.545

4.  Natural Language Processing Applications in the Clinical Neurosciences: A Machine Learning Augmented Systematic Review.

Authors:  Quinlan D Buchlak; Nazanin Esmaili; Christine Bennett; Farrokh Farrokhi
Journal:  Acta Neurochir Suppl       Date:  2022

5.  Workshop on using natural language processing applications for enhancing clinical decision making: an executive summary.

Authors:  Vinay M Pai; Mary Rodgers; Richard Conroy; James Luo; Ruixia Zhou; Belinda Seto
Journal:  J Am Med Inform Assoc       Date:  2013-08-06       Impact factor: 4.497

  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.