Literature DB >> 18541423

Biophysical studies of bacterial ribosome assembly.

James R Williamson1.   

Abstract

The assembly of the bacterial ribosome involves the association of over 50 proteins to 3 large RNA molecules, and it represents a major metabolic activity for rapidly growing bacteria. The availability of atomic structures of the ribosome and the application of biochemical and biophysical methods have led to rapid progress in understanding the mechanistic details of ribosome assembly. The basic steps required to assemble a ribosome are outlined, and the contributions of mass spectrometry, computational methods, and RNA-folding studies in understanding these steps are detailed. This complex process takes place with both sequential and parallel processing that is coordinated to ensure efficient and complete assembly of ribosomes to meet the demands of cell growth.

Mesh:

Year:  2008        PMID: 18541423      PMCID: PMC2494948          DOI: 10.1016/j.sbi.2008.05.001

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  30 in total

1.  Structure of the 30S ribosomal subunit.

Authors:  B T Wimberly; D E Brodersen; W M Clemons; R J Morgan-Warren; A P Carter; C Vonrhein; T Hartsch; V Ramakrishnan
Journal:  Nature       Date:  2000-09-21       Impact factor: 49.962

2.  Mapping structural differences between 30S ribosomal subunit assembly intermediates.

Authors:  Kristi L Holmes; Gloria M Culver
Journal:  Nat Struct Mol Biol       Date:  2004-01-11       Impact factor: 15.369

3.  Importance of transient structures during post-transcriptional refolding of the pre-23S rRNA and ribosomal large subunit assembly.

Authors:  Aivar Liiv; Jaanus Remme
Journal:  J Mol Biol       Date:  2004-09-17       Impact factor: 5.469

Review 4.  rRNA transcription in Escherichia coli.

Authors:  Brian J Paul; Wilma Ross; Tamas Gaal; Richard L Gourse
Journal:  Annu Rev Genet       Date:  2004       Impact factor: 16.830

Review 5.  Mechanism and regulation of bacterial ribosomal RNA processing.

Authors:  A K Srivastava; D Schlessinger
Journal:  Annu Rev Microbiol       Date:  1990       Impact factor: 15.500

Review 6.  Expanding the nucleotide repertoire of the ribosome with post-transcriptional modifications.

Authors:  Christine S Chow; Tek N Lamichhane; Santosh K Mahto
Journal:  ACS Chem Biol       Date:  2007-09-21       Impact factor: 5.100

7.  Collection of small subunit (16S- and 16S-like) ribosomal RNA structures: 1994.

Authors:  R R Gutell
Journal:  Nucleic Acids Res       Date:  1994-09       Impact factor: 16.971

Review 8.  Diverse mechanisms for regulating ribosomal protein synthesis in Escherichia coli.

Authors:  J M Zengel; L Lindahl
Journal:  Prog Nucleic Acid Res Mol Biol       Date:  1994

9.  Assembly mapping of 30 S ribosomal proteins from Escherichia coli. Further studies.

Authors:  W A Held; B Ballou; S Mizushima; M Nomura
Journal:  J Biol Chem       Date:  1974-05-25       Impact factor: 5.157

10.  The Small Subunit rRNA Modification Database.

Authors:  James A McCloskey; Jef Rozenski
Journal:  Nucleic Acids Res       Date:  2005-01-01       Impact factor: 16.971

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  13 in total

Review 1.  Mechanisms of StpA-mediated RNA remodeling.

Authors:  Martina Doetsch; Thomas Gstrein; Renée Schroeder; Boris Fürtig
Journal:  RNA Biol       Date:  2010-11-01       Impact factor: 4.652

Review 2.  Paradigms of ribosome synthesis: Lessons learned from ribosomal proteins.

Authors:  Michael Gamalinda; John L Woolford
Journal:  Translation (Austin)       Date:  2015-02-02

Review 3.  Domain-elongation NMR spectroscopy yields new insights into RNA dynamics and adaptive recognition.

Authors:  Qi Zhang; Hashim M Al-Hashimi
Journal:  RNA       Date:  2009-09-23       Impact factor: 4.942

Review 4.  From water and ions to crowded biomacromolecules: in vivo structuring of a prokaryotic cell.

Authors:  Jan Spitzer
Journal:  Microbiol Mol Biol Rev       Date:  2011-09       Impact factor: 11.056

5.  RNA folding pathways and the self-assembly of ribosomes.

Authors:  Sarah A Woodson
Journal:  Acc Chem Res       Date:  2011-06-29       Impact factor: 22.384

Review 6.  Protein folding at the exit tunnel.

Authors:  Daria V Fedyukina; Silvia Cavagnero
Journal:  Annu Rev Biophys       Date:  2011       Impact factor: 12.981

7.  Effects of protein subunits removal on the computed motions of partial 30S structures of the ribosome.

Authors:  Aimin Yan; Yongmei Wang; Andrzej Kloczkowski; Robert L Jernigan
Journal:  J Chem Theory Comput       Date:  2008-09-20       Impact factor: 6.006

8.  Limited proteolysis analysis of the ribosome is affected by subunit association.

Authors:  Daisy-Malloy Hamburg; Moo-Jin Suh; Patrick A Limbach
Journal:  Biopolymers       Date:  2009-06       Impact factor: 2.505

9.  C2'-endo nucleotides as molecular timers suggested by the folding of an RNA domain.

Authors:  Stefanie A Mortimer; Kevin M Weeks
Journal:  Proc Natl Acad Sci U S A       Date:  2009-08-26       Impact factor: 11.205

10.  Global stabilization of rRNA structure by ribosomal proteins S4, S17, and S20.

Authors:  Priya Ramaswamy; Sarah A Woodson
Journal:  J Mol Biol       Date:  2009-07-16       Impact factor: 5.469

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