Literature DB >> 18540055

Structure of Deinococcus radiodurans tunicamycin-resistance protein (TmrD), a phosphotransferase.

Ulrike Kapp1, Sofia Macedo, David Richard Hall, Ingar Leiros, Sean M McSweeney, Edward Mitchell.   

Abstract

The open-reading frame (ORF) DR_1419 in the Deinococcus radiodurans genome is annotated as a representative of the wide family of tunicamycin-resistance proteins as identified in a range of bacterial genomes. The D. radiodurans ORF DR_1419 was cloned and expressed; the protein TmrD was crystallized and its X-ray crystal structure was determined to 1.95 A resolution. The structure was determined using single-wavelength anomalous diffraction with selenomethionine-derivatized protein. The refined structure is the first to be reported for a member of the tunicamycin-resistance family. It reveals strong structural similarity to the family of nucleoside monophosphate kinases and to the chloramphenicol phosphotransferase of Streptomyces venezuelae, suggesting that the mode of action is possibly by phosphorylation of tunicamycin.

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Year:  2008        PMID: 18540055      PMCID: PMC2496873          DOI: 10.1107/S1744309108011822

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  30 in total

1.  Structural basis for chloramphenicol tolerance in Streptomyces venezuelae by chloramphenicol phosphotransferase activity.

Authors:  T Izard
Journal:  Protein Sci       Date:  2001-08       Impact factor: 6.725

2.  Automated protein model building combined with iterative structure refinement.

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4.  The crystal structures of chloramphenicol phosphotransferase reveal a novel inactivation mechanism.

Authors:  T Izard; J Ellis
Journal:  EMBO J       Date:  2000-06-01       Impact factor: 11.598

5.  Refinement of macromolecular structures by the maximum-likelihood method.

Authors:  G N Murshudov; A A Vagin; E J Dodson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1997-05-01

6.  The CCP4 suite: programs for protein crystallography.

Authors: 
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1994-09-01

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Authors:  J P Abrahams; A G Leslie
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1996-01-01

Review 8.  Genome of the extremely radiation-resistant bacterium Deinococcus radiodurans viewed from the perspective of comparative genomics.

Authors:  K S Makarova; L Aravind; Y I Wolf; R L Tatusov; K W Minton; E V Koonin; M J Daly
Journal:  Microbiol Mol Biol Rev       Date:  2001-03       Impact factor: 11.056

9.  Genome sequence of the radioresistant bacterium Deinococcus radiodurans R1.

Authors:  O White; J A Eisen; J F Heidelberg; E K Hickey; J D Peterson; R J Dodson; D H Haft; M L Gwinn; W C Nelson; D L Richardson; K S Moffat; H Qin; L Jiang; W Pamphile; M Crosby; M Shen; J J Vamathevan; P Lam; L McDonald; T Utterback; C Zalewski; K S Makarova; L Aravind; M J Daly; K W Minton; R D Fleischmann; K A Ketchum; K E Nelson; S Salzberg; H O Smith; J C Venter; C M Fraser
Journal:  Science       Date:  1999-11-19       Impact factor: 47.728

10.  Tunicamycin-resistant mutants and chromosomal locations of mutational sites in Bacillus subtilis.

Authors:  S Nomura; K Yamane; T Sasaki; M Yamasaki; G Tamura; B Maruo
Journal:  J Bacteriol       Date:  1978-11       Impact factor: 3.490

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Journal:  Antimicrob Agents Chemother       Date:  2018-06-26       Impact factor: 5.191

2.  Characterization of the tunicamycin gene cluster unveiling unique steps involved in its biosynthesis.

Authors:  Wenqing Chen; Dongjing Qu; Lipeng Zhai; Meifeng Tao; Yemin Wang; Shuangjun Lin; Neil P J Price; Zixin Deng
Journal:  Protein Cell       Date:  2010-12-09       Impact factor: 14.870

3.  Identification and manipulation of the caprazamycin gene cluster lead to new simplified liponucleoside antibiotics and give insights into the biosynthetic pathway.

Authors:  Leonard Kaysser; Liane Lutsch; Stefanie Siebenberg; Emmanuel Wemakor; Bernd Kammerer; Bertolt Gust
Journal:  J Biol Chem       Date:  2009-04-07       Impact factor: 5.157

4.  Discovery of a novel integron-borne aminoglycoside resistance gene present in clinical pathogens by screening environmental bacterial communities.

Authors:  Maria-Elisabeth Böhm; Mohammad Razavi; Nachiket P Marathe; Carl-Fredrik Flach; D G Joakim Larsson
Journal:  Microbiome       Date:  2020-03-20       Impact factor: 14.650

  4 in total

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