Literature DB >> 18539784

Diversity of uncultured Epsilonproteobacteria from terrestrial sulfidic caves and springs.

Megan L Porter1, Annette Summers Engel.   

Abstract

This study expands the phylogenetic diversity of Epsilonproteobacteria using the 16S rRNA gene framework. Of the 73 lineages defined by sequence similarities at or greater than 99%, most were found at only one site. In contrast, eight lineages were retrieved from sites spanning geographic distances from 1,000 to >10,000 km.

Mesh:

Substances:

Year:  2008        PMID: 18539784      PMCID: PMC2519363          DOI: 10.1128/AEM.02915-07

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  25 in total

1.  A few cosmopolitan phylotypes dominate planktonic archaeal assemblages in widely different oceanic provinces.

Authors:  R Massana; E F DeLong; C Pedrós-Alió
Journal:  Appl Environ Microbiol       Date:  2000-05       Impact factor: 4.792

2.  Biogeography and degree of endemicity of fluorescent Pseudomonas strains in soil.

Authors:  J C Cho; J M Tiedje
Journal:  Appl Environ Microbiol       Date:  2000-12       Impact factor: 4.792

3.  Geographical isolation in hot spring cyanobacteria.

Authors:  R Thane Papke; Niels B Ramsing; Mary M Bateson; David M Ward
Journal:  Environ Microbiol       Date:  2003-08       Impact factor: 5.491

4.  Filamentous "Epsilonproteobacteria" dominate microbial mats from sulfidic cave springs.

Authors:  Annette Summers Engel; Natuschka Lee; Megan L Porter; Libby A Stern; Philip C Bennett; Michael Wagner
Journal:  Appl Environ Microbiol       Date:  2003-09       Impact factor: 4.792

5.  A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood.

Authors:  Stéphane Guindon; Olivier Gascuel
Journal:  Syst Biol       Date:  2003-10       Impact factor: 15.683

6.  MUSCLE: multiple sequence alignment with high accuracy and high throughput.

Authors:  Robert C Edgar
Journal:  Nucleic Acids Res       Date:  2004-03-19       Impact factor: 16.971

Review 7.  An ecological perspective on bacterial biodiversity.

Authors:  M Claire Horner-Devine; Karen M Carney; Brendan J M Bohannan
Journal:  Proc Biol Sci       Date:  2004-01-22       Impact factor: 5.349

8.  Model selection and model averaging in phylogenetics: advantages of akaike information criterion and bayesian approaches over likelihood ratio tests.

Authors:  David Posada; Thomas R Buckley
Journal:  Syst Biol       Date:  2004-10       Impact factor: 15.683

9.  MODELTEST: testing the model of DNA substitution.

Authors:  D Posada; K A Crandall
Journal:  Bioinformatics       Date:  1998       Impact factor: 6.937

10.  The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools.

Authors:  J D Thompson; T J Gibson; F Plewniak; F Jeanmougin; D G Higgins
Journal:  Nucleic Acids Res       Date:  1997-12-15       Impact factor: 16.971

View more
  12 in total

1.  Benthic bacterial diversity in submerged sinkhole ecosystems.

Authors:  Stephen C Nold; Joseph B Pangborn; Heidi A Zajack; Scott T Kendall; Richard R Rediske; Bopaiah A Biddanda
Journal:  Appl Environ Microbiol       Date:  2009-10-30       Impact factor: 4.792

2.  Cultivable microscopic fungi from an underground chemosynthesis-based ecosystem: a preliminary study.

Authors:  Alena Nováková; Vít Hubka; Šárka Valinová; Miroslav Kolařík; Alexandra Maria Hillebrand-Voiculescu
Journal:  Folia Microbiol (Praha)       Date:  2017-05-28       Impact factor: 2.099

Review 3.  Change is good: variations in common biological mechanisms in the epsilonproteobacterial genera Campylobacter and Helicobacter.

Authors:  Jeremy J Gilbreath; William L Cody; D Scott Merrell; David R Hendrixson
Journal:  Microbiol Mol Biol Rev       Date:  2011-03       Impact factor: 11.056

4.  Community structure of subsurface biofilms in the thermal sulfidic caves ofAcquasanta Terme, Italy.

Authors:  D S Jones; D J Tobler; I Schaperdoth; M Mainiero; J L Macalady
Journal:  Appl Environ Microbiol       Date:  2010-07-16       Impact factor: 4.792

5.  Phylogenetic and functional diversity within toluene-degrading, sulphate-reducing consortia enriched from a contaminated aquifer.

Authors:  Anke Kuppardt; Sabine Kleinsteuber; Carsten Vogt; Tillmann Lüders; Hauke Harms; Antonis Chatzinotas
Journal:  Microb Ecol       Date:  2014-03-13       Impact factor: 4.552

6.  Pulsed (13)C2-Acetate Protein-SIP Unveils Epsilonproteobacteria as Dominant Acetate Utilizers in a Sulfate-Reducing Microbial Community Mineralizing Benzene.

Authors:  Robert Starke; Andreas Keller; Nico Jehmlich; Carsten Vogt; Hans H Richnow; Sabine Kleinsteuber; Martin von Bergen; Jana Seifert
Journal:  Microb Ecol       Date:  2016-02-04       Impact factor: 4.552

7.  Metagenomic evidence for sulfur lithotrophy by Epsilonproteobacteria as the major energy source for primary productivity in a sub-aerial arctic glacial deposit, Borup Fiord Pass.

Authors:  Katherine E Wright; Charles Williamson; Stephen E Grasby; John R Spear; Alexis S Templeton
Journal:  Front Microbiol       Date:  2013-04-22       Impact factor: 5.640

8.  Massive dominance of Epsilonproteobacteria in formation waters from a Canadian oil sands reservoir containing severely biodegraded oil.

Authors:  Casey R J Hubert; Thomas B P Oldenburg; Milovan Fustic; Neil D Gray; Stephen R Larter; Kevin Penn; Arlene K Rowan; Rekha Seshadri; Angela Sherry; Richard Swainsbury; Gerrit Voordouw; Johanna K Voordouw; Ian M Head
Journal:  Environ Microbiol       Date:  2011-08-08       Impact factor: 5.491

9.  Complete genome sequence of the sulfur compounds oxidizing chemolithoautotroph Sulfuricurvum kujiense type strain (YK-1(T)).

Authors:  Cliff Han; Oleg Kotsyurbenko; Olga Chertkov; Brittany Held; Alla Lapidus; Matt Nolan; Susan Lucas; Nancy Hammon; Shweta Deshpande; Jan-Fang Cheng; Roxanne Tapia; Lynne A Goodwin; Sam Pitluck; Konstantinos Liolios; Ioanna Pagani; Natalia Ivanova; Konstantinos Mavromatis; Natalia Mikhailova; Amrita Pati; Amy Chen; Krishna Palaniappan; Miriam Land; Loren Hauser; Yun-Juan Chang; Cynthia D Jeffries; Evelyne-Marie Brambilla; Manfred Rohde; Stefan Spring; Johannes Sikorski; Markus Göker; Tanja Woyke; James Bristow; Jonathan A Eisen; Victor Markowitz; Philip Hugenholtz; Nikos C Kyrpides; Hans-Peter Klenk; John C Detter
Journal:  Stand Genomic Sci       Date:  2012-03-05

10.  Metagenome-Based Metabolic Reconstruction Reveals the Ecophysiological Function of Epsilonproteobacteria in a Hydrocarbon-Contaminated Sulfidic Aquifer.

Authors:  Andreas H Keller; Kathleen M Schleinitz; Robert Starke; Stefan Bertilsson; Carsten Vogt; Sabine Kleinsteuber
Journal:  Front Microbiol       Date:  2015-12-10       Impact factor: 5.640

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.