Literature DB >> 18528418

Micron-scale mapping of sulfur cycling across the oxycline of a cyanobacterial mat: a paired nanoSIMS and CARD-FISH approach.

David Andrew Fike1, Crystal Lynn Gammon, Wiebke Ziebis, Victoria Jeanne Orphan.   

Abstract

The metabolic activities of microbial mats have likely regulated biogeochemical cycling over most of Earth's history. However, the relationship between metabolic activity and the establishment of isotopic geochemical gradients in these mats remains poorly constrained. Here we present a parallel microgeochemical and microbiological study of micron-scale sulfur cycling within hypersaline microbial mats from Guerrero Negro, Baja California Sur, Mexico. Dissolved sulfide within the mats was captured on silver discs and analyzed for its abundance and delta(34)S isotopic composition using high-resolution secondary ion mass spectrometry (nanoSIMS). These results were compared to sulfide and oxygen microelectrode profiles. Two-dimensional microgeochemical mapping revealed well-defined laminations in sulfide concentration (on scales from 1 to 200 microm), trending toward increased sulfide concentrations at depth. Sulfide delta(34)S decreased from approximately +10 per thousand to -20 per thousand in the uppermost 3 mm and oscillated repeatedly between -10 per thousand and -30 per thousand down to a depth of 8 mm. These variations are attributed to spatially variable bacterial sulfate reduction within the mat. A parallel examination of the spatial distribution of known sulfate-reducing bacteria within the family Desulfobacteraceae was conducted using catalyzed reporter deposition fluorescence in situ hybridization. Significant concentrations of Desulfobacteraceae were observed in both oxic and anoxic zones of the mat and occurred in several distinct layers, in large aggregates and heterogeneously dispersed as single cells throughout. The spatial distribution of these microorganisms is consistent with the variation in sulfide concentration and isotopic composition we observed. The parallel application of the methodologies developed here can shed light on micron-scale sulfur cycling within microbially dominated sedimentary environments.

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Year:  2008        PMID: 18528418     DOI: 10.1038/ismej.2008.39

Source DB:  PubMed          Journal:  ISME J        ISSN: 1751-7362            Impact factor:   10.302


  34 in total

1.  Respiration response imaging for real-time detection of microbial function at the single-cell level.

Authors:  M C Konopka; T J Strovas; David S Ojala; L Chistoserdova; M E Lidstrom; M G Kalyuzhnaya
Journal:  Appl Environ Microbiol       Date:  2010-11-12       Impact factor: 4.792

Review 2.  Exploring the Fundamental Structures of Life: Non-Targeted, Chemical Analysis of Single Cells and Subcellular Structures.

Authors:  Elizabeth K Neumann; Thanh D Do; Troy J Comi; Jonathan V Sweedler
Journal:  Angew Chem Int Ed Engl       Date:  2019-04-11       Impact factor: 15.336

3.  Diversity and stratification of archaea in a hypersaline microbial mat.

Authors:  Charles E Robertson; John R Spear; J Kirk Harris; Norman R Pace
Journal:  Appl Environ Microbiol       Date:  2008-12-29       Impact factor: 4.792

4.  Emerging mass spectrometry techniques for the direct analysis of microbial colonies.

Authors:  Jinshu Fang; Pieter C Dorrestein
Journal:  Curr Opin Microbiol       Date:  2014-07-26       Impact factor: 7.934

5.  Biological explorations with nanoscale secondary ion mass spectrometry.

Authors:  Frank Gyngard; Matthew L Steinhauser
Journal:  J Anal At Spectrom       Date:  2019-07-10       Impact factor: 4.023

6.  FISH Variants.

Authors:  Nuno M Guimarães; Nuno F Azevedo; Carina Almeida
Journal:  Methods Mol Biol       Date:  2021

7.  Organismal and spatial partitioning of energy and macronutrient transformations within a hypersaline mat.

Authors:  Jennifer M Mobberley; Stephen R Lindemann; Hans C Bernstein; James J Moran; Ryan S Renslow; Jerome Babauta; Dehong Hu; Haluk Beyenal; William C Nelson
Journal:  FEMS Microbiol Ecol       Date:  2017-04-01       Impact factor: 4.194

8.  High bacterial diversity in epilithic biofilms of oligotrophic mountain lakes.

Authors:  Mireia Bartrons; Jordi Catalan; Emilio O Casamayor
Journal:  Microb Ecol       Date:  2012-05-24       Impact factor: 4.552

9.  SQUID-SIMS is a useful approach to uncover primary signals in the Archean sulfur cycle.

Authors:  Woodward W Fischer; David A Fike; Jena E Johnson; Timothy D Raub; Yunbin Guan; Joseph L Kirschvink; John M Eiler
Journal:  Proc Natl Acad Sci U S A       Date:  2014-04-01       Impact factor: 11.205

Review 10.  Imaging mass spectrometry in microbiology.

Authors:  Jeramie D Watrous; Pieter C Dorrestein
Journal:  Nat Rev Microbiol       Date:  2011-08-08       Impact factor: 60.633

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