Literature DB >> 18517839

Community structure in directed networks.

E A Leicht1, M E J Newman.   

Abstract

We consider the problem of finding communities or modules in directed networks. In the past, the most common approach to this problem has been to ignore edge direction and apply methods developed for community discovery in undirected networks, but this approach discards potentially useful information contained in the edge directions. Here we show how the widely used community finding technique of modularity maximization can be generalized in a principled fashion to incorporate information contained in edge directions. We describe an explicit algorithm based on spectral optimization of the modularity and show that it gives demonstrably better results than previous methods on a variety of test networks, both real and computer generated.

Mesh:

Year:  2008        PMID: 18517839     DOI: 10.1103/PhysRevLett.100.118703

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  122 in total

1.  Edge direction and the structure of networks.

Authors:  Jacob G Foster; David V Foster; Peter Grassberger; Maya Paczuski
Journal:  Proc Natl Acad Sci U S A       Date:  2010-05-26       Impact factor: 11.205

2.  Effect of network topology on neuronal encoding based on spatiotemporal patterns of spikes.

Authors:  Petra E Vertes; Thomas Duke
Journal:  HFSP J       Date:  2010-05-07

3.  Optimizing brain networks topologies using multi-objective evolutionary computation.

Authors:  Roberto Santana; Concha Bielza; Pedro Larrañaga
Journal:  Neuroinformatics       Date:  2011-03

4.  Kantian fractionalization predicts the conflict propensity of the international system.

Authors:  Skyler J Cranmer; Elizabeth J Menninga; Peter J Mucha
Journal:  Proc Natl Acad Sci U S A       Date:  2015-09-03       Impact factor: 11.205

5.  Altered resting state complexity in schizophrenia.

Authors:  Danielle S Bassett; Brent G Nelson; Bryon A Mueller; Jazmin Camchong; Kelvin O Lim
Journal:  Neuroimage       Date:  2011-10-08       Impact factor: 6.556

6.  Key role of coupling, delay, and noise in resting brain fluctuations.

Authors:  Gustavo Deco; Viktor Jirsa; A R McIntosh; Olaf Sporns; Rolf Kötter
Journal:  Proc Natl Acad Sci U S A       Date:  2009-06-03       Impact factor: 11.205

7.  Scaling of topologically similar functional modules defines mouse primary auditory and somatosensory microcircuitry.

Authors:  Alexander J Sadovsky; Jason N MacLean
Journal:  J Neurosci       Date:  2013-08-28       Impact factor: 6.167

8.  The relationship between modularity and robustness in signalling networks.

Authors:  Tien-Dzung Tran; Yung-Keun Kwon
Journal:  J R Soc Interface       Date:  2013-09-18       Impact factor: 4.118

9.  MORO: a Cytoscape app for relationship analysis between modularity and robustness in large-scale biological networks.

Authors:  Cong-Doan Truong; Tien-Dzung Tran; Yung-Keun Kwon
Journal:  BMC Syst Biol       Date:  2016-12-23

10.  Functional clustering algorithm for the analysis of dynamic network data.

Authors:  S Feldt; J Waddell; V L Hetrick; J D Berke; M Zochowski
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2009-05-07
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