Literature DB >> 19518518

Functional clustering algorithm for the analysis of dynamic network data.

S Feldt1, J Waddell, V L Hetrick, J D Berke, M Zochowski.   

Abstract

We formulate a technique for the detection of functional clusters in discrete event data. The advantage of this algorithm is that no prior knowledge of the number of functional groups is needed, as our procedure progressively combines data traces and derives the optimal clustering cutoff in a simple and intuitive manner through the use of surrogate data sets. In order to demonstrate the power of this algorithm to detect changes in network dynamics and connectivity, we apply it to both simulated neural spike train data and real neural data obtained from the mouse hippocampus during exploration and slow-wave sleep. Using the simulated data, we show that our algorithm performs better than existing methods. In the experimental data, we observe state-dependent clustering patterns consistent with known neurophysiological processes involved in memory consolidation.

Entities:  

Mesh:

Year:  2009        PMID: 19518518      PMCID: PMC2814878          DOI: 10.1103/PhysRevE.79.056104

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  40 in total

1.  Reactivation of hippocampal cell assemblies: effects of behavioral state, experience, and EEG dynamics.

Authors:  H S Kudrimoti; C A Barnes; B L McNaughton
Journal:  J Neurosci       Date:  1999-05-15       Impact factor: 6.167

2.  Analysis of weighted networks.

Authors:  M E J Newman
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2004-11-24

Review 3.  Functional connectivity in the brain--is it an elusive concept?

Authors:  Andrew A Fingelkurts; Alexander A Fingelkurts; Seppo Kähkönen
Journal:  Neurosci Biobehav Rev       Date:  2005-01       Impact factor: 8.989

4.  Temporally precise cortical firing patterns are associated with distinct action segments.

Authors:  Tomer Shmiel; Rotem Drori; Oren Shmiel; Yoram Ben-Shaul; Zoltan Nadasdy; Moshe Shemesh; Mina Teicher; Moshe Abeles
Journal:  J Neurophysiol       Date:  2006-08-02       Impact factor: 2.714

5.  Precisely timed spatiotemporal patterns of neural activity in dissociated cortical cultures.

Authors:  J D Rolston; D A Wagenaar; S M Potter
Journal:  Neuroscience       Date:  2007-07-05       Impact factor: 3.590

6.  Identification and clustering of event patterns from in vivo multiphoton optical recordings of neuronal ensembles.

Authors:  Ilker Ozden; H Megan Lee; Megan R Sullivan; Samuel S-H Wang
Journal:  J Neurophysiol       Date:  2008-05-21       Impact factor: 2.714

7.  A model for visual shape recognition.

Authors:  P M Milner
Journal:  Psychol Rev       Date:  1974-11       Impact factor: 8.934

8.  Functional connectivity: the principal-component analysis of large (PET) data sets.

Authors:  K J Friston; C D Frith; P F Liddle; R S Frackowiak
Journal:  J Cereb Blood Flow Metab       Date:  1993-01       Impact factor: 6.200

9.  A clustering technique for summarizing multivariate data.

Authors:  G H Ball; D J Hall
Journal:  Behav Sci       Date:  1967-03

10.  Transient 23-30 Hz oscillations in mouse hippocampus during exploration of novel environments.

Authors:  Joshua D Berke; Vaughn Hetrick; Jason Breck; Robert W Greene
Journal:  Hippocampus       Date:  2008       Impact factor: 3.899

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  20 in total

1.  Memory formation: from network structure to neural dynamics.

Authors:  Sarah Feldt; Jane X Wang; Vaughn L Hetrick; Joshua D Berke; Michal Zochowski
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2010-05-13       Impact factor: 4.226

2.  A neocortical delta rhythm facilitates reciprocal interlaminar interactions via nested theta rhythms.

Authors:  Lucy M Carracedo; Henrik Kjeldsen; Leonie Cunnington; Alastair Jenkins; Ian Schofield; Mark O Cunningham; Ceri H Davies; Roger D Traub; Miles A Whittington
Journal:  J Neurosci       Date:  2013-06-26       Impact factor: 6.167

3.  Computational study of synchrony in fields and microclusters of ephaptically coupled neurons.

Authors:  R Greg Stacey; Lennart Hilbert; Thomas Quail
Journal:  J Neurophysiol       Date:  2015-02-11       Impact factor: 2.714

4.  Detecting causality in policy diffusion processes.

Authors:  Carsten Grabow; James Macinko; Diana Silver; Maurizio Porfiri
Journal:  Chaos       Date:  2016-08       Impact factor: 3.642

5.  Functional network stability and average minimal distance - A framework to rapidly assess dynamics of functional network representations.

Authors:  Jiaxing Wu; Quinton M Skilling; Daniel Maruyama; Chenguang Li; Nicolette Ognjanovski; Sara Aton; Michal Zochowski
Journal:  J Neurosci Methods       Date:  2017-12-30       Impact factor: 2.390

6.  Dynamic graph metrics: Tutorial, toolbox, and tale.

Authors:  Ann E Sizemore; Danielle S Bassett
Journal:  Neuroimage       Date:  2017-07-08       Impact factor: 6.556

7.  Spatially clustered neuronal assemblies comprise the microstructure of synchrony in chronically epileptic networks.

Authors:  Sarah Feldt Muldoon; Ivan Soltesz; Rosa Cossart
Journal:  Proc Natl Acad Sci U S A       Date:  2013-02-11       Impact factor: 11.205

8.  Statistical evaluation of synchronous spike patterns extracted by frequent item set mining.

Authors:  Emiliano Torre; David Picado-Muiño; Michael Denker; Christian Borgelt; Sonja Grün
Journal:  Front Comput Neurosci       Date:  2013-10-23       Impact factor: 2.380

9.  Finding neural assemblies with frequent item set mining.

Authors:  David Picado-Muiño; Christian Borgelt; Denise Berger; George Gerstein; Sonja Grün
Journal:  Front Neuroinform       Date:  2013-05-31       Impact factor: 4.081

Review 10.  Monitoring Spiking Activity of Many Individual Neurons in Invertebrate Ganglia.

Authors:  W N Frost; C J Brandon; A M Bruno; M D Humphries; C Moore-Kochlacs; T J Sejnowski; J Wang; E S Hill
Journal:  Adv Exp Med Biol       Date:  2015       Impact factor: 2.622

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