Literature DB >> 18517652

Optimizing the readout of morphogen gradients.

Eldon Emberly1.   

Abstract

In multicellular organisms, the initial patterns of gene expression are regulated by spatial gradients of biochemical factors, known as morphogen gradients. Because of biochemical noise in the morphogen gradients there are associated spatial errors in the positions of target gene patterns. Using a simple single morphogen and/or single target gene model, we use propagation of error analysis to derive a condition on the amount of morphogen that needs to be produced in order to have precise spatial patterning of the target. We find that there is an optimal morphogen gradient profile that requires the least amount of morphogen to be produced. Experimental results for the Bicoid-Hunchback system in early Drosophila development are consistent with the predictions of this analysis. We also discuss our results in the context of recent work that analyzed this system using mutual information as an organizing principle, and show that minimizing the amount of morphogen produced also leads to a near optimal flow of information between input and target.

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Year:  2008        PMID: 18517652     DOI: 10.1103/PhysRevE.77.041903

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  5 in total

Review 1.  The measure of success: constraints, objectives, and tradeoffs in morphogen-mediated patterning.

Authors:  Arthur D Lander; Wing-Cheong Lo; Qing Nie; Frederic Y M Wan
Journal:  Cold Spring Harb Perspect Biol       Date:  2009-07       Impact factor: 10.005

2.  Spectral solutions to stochastic models of gene expression with bursts and regulation.

Authors:  Andrew Mugler; Aleksandra M Walczak; Chris H Wiggins
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2009-10-20

3.  Optimizing information flow in small genetic networks.

Authors:  Gasper Tkacik; Aleksandra M Walczak; William Bialek
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2009-09-29

Review 4.  The organelle of differentiation in embryos: the cell state splitter.

Authors:  Natalie K Gordon; Richard Gordon
Journal:  Theor Biol Med Model       Date:  2016-03-10       Impact factor: 2.432

5.  Precision of morphogen gradients in neural tube development.

Authors:  Roman Vetter; Dagmar Iber
Journal:  Nat Commun       Date:  2022-03-03       Impact factor: 14.919

  5 in total

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