Literature DB >> 18517427

Refined procedure of evaluating experimental single-molecule force spectroscopy data.

Alexander Fuhrmann1, Dario Anselmetti, Robert Ros, Sebastian Getfert, Peter Reimann.   

Abstract

Dynamic force spectroscopy is a well-established tool to study molecular recognition in a wide range of binding affinities on the single-molecule level. The theoretical interpretation of these data is still very challenging and the models describe the experimental data only partly. In this paper we reconsider the basic assumptions of the models on the basis of an experimental data set and propose an approach of analyzing and quantitatively evaluating dynamic force spectroscopy data on single ligand-receptor complexes. We present our procedure to process and analyze the force-distance curves, to detect the rupture events in an automated manner, and to calculate quantitative parameters for a biophysical characterization of the investigated interaction.

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Year:  2008        PMID: 18517427     DOI: 10.1103/PhysRevE.77.031912

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  12 in total

1.  Long lifetime of hydrogen-bonded DNA basepairs by force spectroscopy.

Authors:  Alexander Fuhrmann; Sebastian Getfert; Qiang Fu; Peter Reimann; Stuart Lindsay; Robert Ros
Journal:  Biophys J       Date:  2012-05-15       Impact factor: 4.033

2.  Single-molecule force spectroscopy of cartilage aggrecan self-adhesion.

Authors:  Alexander Harder; Volker Walhorn; Thomas Dierks; Xavier Fernàndez-Busquets; Dario Anselmetti
Journal:  Biophys J       Date:  2010-11-17       Impact factor: 4.033

3.  Antibody-unfolding and metastable-state binding in force spectroscopy and recognition imaging.

Authors:  Parminder Kaur; Alexander Fuhrmann; Robert Ros; Linda Obenauer Kutner; Lumelle A Schneeweis; Ryman Navoa; Kirby Steger; Lei Xie; Christopher Yonan; Ralph Abraham; Michael J Grace; Stuart Lindsay
Journal:  Biophys J       Date:  2011-01-05       Impact factor: 4.033

4.  Identifying single bases in a DNA oligomer with electron tunnelling.

Authors:  Shuo Huang; Jin He; Shuai Chang; Peiming Zhang; Feng Liang; Shengqin Li; Michael Tuchband; Alexander Fuhrmann; Robert Ros; Stuart Lindsay
Journal:  Nat Nanotechnol       Date:  2010-11-14       Impact factor: 39.213

5.  Bayesian Uncertainty Quantification for Bond Energies and Mobilities Using Path Integral Analysis.

Authors:  Joshua C Chang; Pak-Wing Fok; Tom Chou
Journal:  Biophys J       Date:  2015-09-01       Impact factor: 4.033

6.  Methods and estimations of uncertainties in single-molecule dynamic force spectroscopy.

Authors:  Oscar Björnham; Staffan Schedin
Journal:  Eur Biophys J       Date:  2009-05-22       Impact factor: 1.733

7.  Quantitative analysis of single-molecule RNA-protein interaction.

Authors:  Alexander Fuhrmann; Jan C Schoening; Dario Anselmetti; Dorothee Staiger; Robert Ros
Journal:  Biophys J       Date:  2009-06-17       Impact factor: 4.033

8.  Longer collagen fibers trigger multicellular streaming on soft substrates via enhanced forces and cell-cell cooperation.

Authors:  Bapi Sarker; Amrit Bagchi; Christopher Walter; José Almeida; Amit Pathak
Journal:  J Cell Sci       Date:  2019-09-26       Impact factor: 5.285

9.  Origin of the nonadhesive properties of fibrinogen matrices probed by force spectroscopy.

Authors:  Ivan S Yermolenko; Alexander Fuhrmann; Sergei N Magonov; Valeryi K Lishko; Stanislav P Oshkadyerov; Robert Ros; Tatiana P Ugarova
Journal:  Langmuir       Date:  2010-09-30       Impact factor: 3.882

10.  Haptotaxis is cell type specific and limited by substrate adhesiveness.

Authors:  Jessica H Wen; Onkiu Choi; Hermes Taylor-Weiner; Alexander Fuhrmann; Jerome V Karpiak; Adah Almutairi; Adam J Engler
Journal:  Cell Mol Bioeng       Date:  2015-06-03       Impact factor: 2.321

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