Literature DB >> 18515550

Inhibition of translation in living eukaryotic cells by an RNA G-quadruplex motif.

Amit Arora1, Mariola Dutkiewicz, Vinod Scaria, Manoj Hariharan, Souvik Maiti, Jens Kurreck.   

Abstract

Guanine-rich sequences can adopt intramolecular four-stranded structures, called G-quadruplexes. These motifs have been intensively investigated on the DNA level, but their overall biological relevance remains elusive. Only recently has research concerning the function of G-quadruplexes in RNAs commenced. Here, we demonstrate for the first time, that an RNA G-quadruplex structure inhibits translation in vivo in eukaryotic cells. We investigated the function of a highly conserved, thermodynamically stable RNA G-quadruplex in the 5'-UTR of the mRNA of the human Zic-1 zinc-finger protein. Using dual luciferase reporter assay, we demonstrate that the Zic-1 RNA G-quadruplex represses protein synthesis inside eukaryotic cells. Quantitative RT-PCR assays confirmed that the reduction of protein synthesis is due to regulation of the translation process and not a consequence of reduced transcription. Western blot analysis revealed that expression of Zic-1 is strongly reduced by a 73 nucleotides-long fragment of the UTR containing the G-quadruplex motif. These structures might add to the more recently discovered elements in untranslated regions of mRNAs that regulate their translation.

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Year:  2008        PMID: 18515550      PMCID: PMC2441988          DOI: 10.1261/rna.1001708

Source DB:  PubMed          Journal:  RNA        ISSN: 1355-8382            Impact factor:   4.942


  35 in total

1.  Structural competition involving G-quadruplex DNA and its complement.

Authors:  Wei Li; Daisuke Miyoshi; Shu-ichi Nakano; Naoki Sugimoto
Journal:  Biochemistry       Date:  2003-10-14       Impact factor: 3.162

Review 2.  Beginning to understand the end of the chromosome.

Authors:  Thomas R Cech
Journal:  Cell       Date:  2004-01-23       Impact factor: 41.582

3.  Helix formation by guanylic acid.

Authors:  M GELLERT; M N LIPSETT; D R DAVIES
Journal:  Proc Natl Acad Sci U S A       Date:  1962-12-15       Impact factor: 11.205

Review 4.  Gene regulation by riboswitches.

Authors:  Maumita Mandal; Ronald R Breaker
Journal:  Nat Rev Mol Cell Biol       Date:  2004-06       Impact factor: 94.444

5.  Intracellular transcription of G-rich DNAs induces formation of G-loops, novel structures containing G4 DNA.

Authors:  Michelle L Duquette; Priya Handa; Jack A Vincent; Andrew F Taylor; Nancy Maizels
Journal:  Genes Dev       Date:  2004-07-01       Impact factor: 11.361

Review 6.  Structural features in eukaryotic mRNAs that modulate the initiation of translation.

Authors:  M Kozak
Journal:  J Biol Chem       Date:  1991-10-25       Impact factor: 5.157

7.  Following G-quartet formation by UV-spectroscopy.

Authors:  J L Mergny; A T Phan; L Lacroix
Journal:  FEBS Lett       Date:  1998-09-11       Impact factor: 4.124

8.  Mouse Zic1 is involved in cerebellar development.

Authors:  J Aruga; O Minowa; H Yaginuma; J Kuno; T Nagai; T Noda; K Mikoshiba
Journal:  J Neurosci       Date:  1998-01-01       Impact factor: 6.167

9.  Predominant expression of human zic in cerebellar granule cell lineage and medulloblastoma.

Authors:  N Yokota; J Aruga; S Takai; K Yamada; M Hamazaki; T Iwase; H Sugimura; K Mikoshiba
Journal:  Cancer Res       Date:  1996-01-15       Impact factor: 12.701

10.  G-quartet-dependent recognition between the FMRP RGG box and RNA.

Authors:  Andres Ramos; David Hollingworth; Annalisa Pastore
Journal:  RNA       Date:  2003-10       Impact factor: 4.942

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  65 in total

1.  Translational repression of the disintegrin and metalloprotease ADAM10 by a stable G-quadruplex secondary structure in its 5'-untranslated region.

Authors:  Sven Lammich; Frits Kamp; Judith Wagner; Brigitte Nuscher; Sonja Zilow; Ann-Katrin Ludwig; Michael Willem; Christian Haass
Journal:  J Biol Chem       Date:  2011-11-07       Impact factor: 5.157

2.  The BCL-2 5' untranslated region contains an RNA G-quadruplex-forming motif that modulates protein expression.

Authors:  Ramla Shahid; Anthony Bugaut; Shankar Balasubramanian
Journal:  Biochemistry       Date:  2010-09-28       Impact factor: 3.162

3.  Fragile X mental retardation protein recognizes a G quadruplex structure within the survival motor neuron domain containing 1 mRNA 5'-UTR.

Authors:  Damian S McAninch; Ashley M Heinaman; Cara N Lang; Kathryn R Moss; Gary J Bassell; Mihaela Rita Mihailescu; Timothy L Evans
Journal:  Mol Biosyst       Date:  2017-07-25

4.  Investigation of mRNA quadruplex formation in Escherichia coli.

Authors:  Markus Wieland; Jörg S Hartig
Journal:  Nat Protoc       Date:  2009-10-22       Impact factor: 13.491

5.  G-Quadruplex in the NRF2 mRNA 5' Untranslated Region Regulates De Novo NRF2 Protein Translation under Oxidative Stress.

Authors:  Sang C Lee; Jack Zhang; Josh Strom; Danzhou Yang; Thai Nho Dinh; Kyle Kappeler; Qin M Chen
Journal:  Mol Cell Biol       Date:  2016-12-19       Impact factor: 4.272

6.  5'-UTR G-quadruplex structures acting as translational repressors.

Authors:  Jean-Denis Beaudoin; Jean-Pierre Perreault
Journal:  Nucleic Acids Res       Date:  2010-06-22       Impact factor: 16.971

7.  A G-quadruplex structure within the 5'-UTR of TRF2 mRNA represses translation in human cells.

Authors:  Dennis Gomez; Aurore Guédin; Jean-Louis Mergny; Bernard Salles; Jean-François Riou; Marie-Paule Teulade-Fichou; Patrick Calsou
Journal:  Nucleic Acids Res       Date:  2010-06-22       Impact factor: 16.971

8.  TTS mapping: integrative WEB tool for analysis of triplex formation target DNA sequences, G-quadruplets and non-protein coding regulatory DNA elements in the human genome.

Authors:  Piroon Jenjaroenpun; Vladimir A Kuznetsov
Journal:  BMC Genomics       Date:  2009-12-03       Impact factor: 3.969

9.  The quadruplex r(CGG)n destabilizing cationic porphyrin TMPyP4 cooperates with hnRNPs to increase the translation efficiency of fragile X premutation mRNA.

Authors:  Noa Ofer; Pnina Weisman-Shomer; Jeny Shklover; Michael Fry
Journal:  Nucleic Acids Res       Date:  2009-03-09       Impact factor: 16.971

10.  Predictable suppression of gene expression by 5'-UTR-based RNA quadruplexes.

Authors:  Kangkan Halder; Markus Wieland; Jörg S Hartig
Journal:  Nucleic Acids Res       Date:  2009-09-09       Impact factor: 16.971

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