Literature DB >> 18515396

Examining the contributions of lipid shape and headgroup charge on bilayer behavior.

Allison Dickey1, Roland Faller.   

Abstract

To better understand bilayer property dependency on lipid electrostatics and headgroup size, we use atomistic molecular dynamics simulations to study negatively charged and neutral lipid membranes. We compare the negatively charged phosphatidic acid (PA), which at physiological pH and salt concentration has a negative spontaneous curvature, with the negatively charged phosphatidylglycerol (PG) and neutrally charged phosphatidylcholine (PC), both of which have zero spontaneous curvature. The PA lipids are simulated using two different sets of partial charges for the headgroup and the varied charge distribution between the two PA systems results in significantly different locations for the Na(+) ions relative to the water/membrane interface. For one PA system, the Na(+) ions are localized around the phosphate group. In the second PA system, the Na(+) ions are located near the ester carbonyl atoms, which coincides with the preferred location site for the PG Na(+) ions. We find that the Na(+) ion location has a larger effect on bilayer fluidity properties than lipid headgroup size, where the A(lipid) and acyl chain order parameter values are more similar between the PA and PG bilayers that have Na(+) ions located near the ester groups than between the two PA bilayers.

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Year:  2008        PMID: 18515396      PMCID: PMC2527283          DOI: 10.1529/biophysj.107.128074

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  39 in total

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4.  Molecular dynamics simulation of a phosphatidylglycerol membrane.

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5.  Dynamics of water at membrane surfaces: Effect of headgroup structure.

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Review 6.  Lipid-protein interactions in biological membranes: a structural perspective.

Authors:  A G Lee
Journal:  Biochim Biophys Acta       Date:  2003-05-02

7.  Molecular dynamics simulation of a palmitoyl-oleoyl phosphatidylserine bilayer with Na+ counterions and NaCl.

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9.  Variation in hydration forces between neutral phospholipid bilayers: evidence for hydration attraction.

Authors:  R P Rand; N Fuller; V A Parsegian; D C Rau
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10.  Molecular dynamics simulations of ternary membrane mixture: phosphatidylcholine, phosphatidic acid, and cholesterol.

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  38 in total

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Journal:  ACS Appl Mater Interfaces       Date:  2016-09-09       Impact factor: 9.229

7.  Biophysical and molecular-dynamics studies of phosphatidic acid binding by the Dvl-2 DEP domain.

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8.  Artificial neural networks for the inverse design of nanoparticles with preferential nano-bio behaviors.

Authors:  Sergio A Hassan
Journal:  J Chem Phys       Date:  2020-08-07       Impact factor: 3.488

9.  Strong dependence of the nano-bio interactions on core morphology and layer composition of ultrasmall nanostructures.

Authors:  Sergio A Hassan
Journal:  J Chem Phys       Date:  2019-09-14       Impact factor: 3.488

10.  Lipids Activate SecA for High Affinity Binding to the SecYEG Complex.

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Journal:  J Biol Chem       Date:  2016-09-09       Impact factor: 5.157

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