Literature DB >> 18505377

Positive selection in the human genome: from genome scans to biological significance.

Joanna L Kelley1, Willie J Swanson.   

Abstract

Here we review the evidence for positive selection in the human genome and its role in human evolution and population differentiation. In recent years, there has been a dramatic increase in the use of genome-wide scans to identify adaptively evolving loci in the human genome. Attention is now turning to understanding the biological relevance and adaptive significance of the regions identified as being subject to recent positive selection. Examples of adaptively evolving loci are discussed, specifically LCT and FOXP2. Comprehensive studies of these loci also provide information about the functional relevance of the selected alleles. We discuss current studies examining the role of positive selection in shaping copy number variation and noncoding genomic regions and highlight challenges presented by the study of positive selection in the human genome.

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Year:  2008        PMID: 18505377     DOI: 10.1146/annurev.genom.9.081307.164411

Source DB:  PubMed          Journal:  Annu Rev Genomics Hum Genet        ISSN: 1527-8204            Impact factor:   8.929


  39 in total

Review 1.  Recent advances in understanding the role of nutrition in human genome evolution.

Authors:  Kaixiong Ye; Zhenglong Gu
Journal:  Adv Nutr       Date:  2011-11-03       Impact factor: 8.701

2.  Contrasts between adaptive coding and noncoding changes during human evolution.

Authors:  Ralph Haygood; Courtney C Babbitt; Olivier Fedrigo; Gregory A Wray
Journal:  Proc Natl Acad Sci U S A       Date:  2010-04-12       Impact factor: 11.205

3.  GWAS: heritability missing in action?

Authors:  Angus J Clarke; David N Cooper
Journal:  Eur J Hum Genet       Date:  2010-03-17       Impact factor: 4.246

4.  Signatures of founder effects, admixture, and selection in the Ashkenazi Jewish population.

Authors:  Steven M Bray; Jennifer G Mulle; Anne F Dodd; Ann E Pulver; Stephen Wooding; Stephen T Warren
Journal:  Proc Natl Acad Sci U S A       Date:  2010-08-26       Impact factor: 11.205

5.  Natural selection shapes nucleotide polymorphism across the genome of the nematode Caenorhabditis briggsae.

Authors:  Asher D Cutter; Jae Young Choi
Journal:  Genome Res       Date:  2010-05-27       Impact factor: 9.043

6.  Genome-wide scan with nearly 700,000 SNPs in two Sardinian sub-populations suggests some regions as candidate targets for positive selection.

Authors:  Ignazio Stefano Piras; Antonella De Montis; Carla Maria Calò; Monica Marini; Manuela Atzori; Laura Corrias; Marco Sazzini; Alessio Boattini; Giuseppe Vona; Licinio Contu
Journal:  Eur J Hum Genet       Date:  2012-04-25       Impact factor: 4.246

Review 7.  Population genetic inference from genomic sequence variation.

Authors:  John E Pool; Ines Hellmann; Jeffrey D Jensen; Rasmus Nielsen
Journal:  Genome Res       Date:  2010-01-12       Impact factor: 9.043

8.  Widespread signatures of recent selection linked to nucleosome positioning in the human lineage.

Authors:  James G D Prendergast; Colin A M Semple
Journal:  Genome Res       Date:  2011-09-08       Impact factor: 9.043

9.  Late-postnatal cannabinoid exposure persistently increases FoxP2 expression within zebra finch striatum.

Authors:  Ken Soderstrom; Bin Luo
Journal:  Dev Neurobiol       Date:  2010-02-15       Impact factor: 3.964

10.  Sequence variation and selection of small RNAs in domesticated rice.

Authors:  Yu Wang; Dan Shen; Shiping Bo; Huan Chen; Jian Zheng; Qian-Hao Zhu; Daguang Cai; Chris Helliwell; Longjiang Fan
Journal:  BMC Evol Biol       Date:  2010-04-30       Impact factor: 3.260

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