Literature DB >> 18499490

Prediction of bond dissociation enthalpy of antioxidant phenols by support vector machine.

Chanin Nantasenamat1, Chartchalerm Isarankura-Na-Ayudhya, Thanakorn Naenna, Virapong Prachayasittikul.   

Abstract

Antioxidants play crucial roles in scavenging oxidative damages arising from reactive oxygen species. Bond dissociation enthalpy (BDE) of phenolic O-H bond has well been accepted as an indicator of antioxidant activity since phenols donate the hydrogen atom to the free radicals thereby neutralizing its toxic effect. The BDEs from a data set of 39 antioxidant phenols were modeled using computationally inexpensive quantum chemical descriptors with multiple linear regression (MLR), partial least squares (PLS), and support vector machine (SVM). The molecular descriptors of the phenols were derived from calculations at the following theoretical levels: AM1, HF/3-21g(d), B3LYP/3-21g(d), and B3LYP/6-31g(d). Results indicated that when MLR and PLS were used as the regression methods, B3LYP/3-21g(d) gave the best performance with leave-one-out cross-validated correlation coefficients (r) of 0.917 and 0.921, respectively, while the semiempirical AM1 provided slightly lower r of 0.897 and 0.888, respectively. When SVM was used as the regression method no significant difference in the accuracy was observed for models using B3LYP/3-21g(d) and AM1 as indicated by r of 0.968 and 0.966, respectively. The quantitative structure-property relationship (QSPR) model of BDE discussed in this study offers great potential for the design of novel antioxidant phenols with robust properties.

Entities:  

Mesh:

Substances:

Year:  2008        PMID: 18499490     DOI: 10.1016/j.jmgm.2008.04.005

Source DB:  PubMed          Journal:  J Mol Graph Model        ISSN: 1093-3263            Impact factor:   2.518


  11 in total

1.  PyBact: an algorithm for bacterial identification.

Authors:  Chanin Nantasenamat; Likit Preeyanon; Chartchalerm Isarankura-Na-Ayudhya; Virapong Prachayasittikul
Journal:  EXCLI J       Date:  2011-11-24       Impact factor: 4.068

2.  Exploring the chemical space of aromatase inhibitors.

Authors:  Chanin Nantasenamat; Hao Li; Prasit Mandi; Apilak Worachartcheewan; Teerawat Monnor; Chartchalerm Isarankura-Na-Ayudhya; Virapong Prachayasittikul
Journal:  Mol Divers       Date:  2013-07-16       Impact factor: 2.943

3.  Mitochondrial biotransformation of omega-(phenoxy)alkanoic acids, 3-(phenoxy)acrylic acids, and omega-(1-methyl-1H-imidazol-2-ylthio)alkanoic acids: a prodrug strategy for targeting cytoprotective antioxidants to mitochondria.

Authors:  Kurt S Roser; Paul S Brookes; Andrew P Wojtovich; Leif P Olson; Jalil Shojaie; Richard L Parton; M W Anders
Journal:  Bioorg Med Chem       Date:  2010-01-15       Impact factor: 3.641

4.  Synthesis and computational investigation of molecularly imprinted nanospheres for selective recognition of alpha-tocopherol succinate.

Authors:  Theeraphon Piacham; Chanin Nantasenamat; Chartchalerm Isarankura-Na-Ayudhya; Virapong Prachayasittikul
Journal:  EXCLI J       Date:  2013-08-14       Impact factor: 4.068

5.  QSAR study of anti-prion activity of 2-aminothiazoles.

Authors:  Prasit Mandi; Chanin Nantasenamat; Kakanand Srungboonmee; Chartchalerm Isarankura-Na-Ayudhya; Virapong Prachayasittikul
Journal:  EXCLI J       Date:  2012-08-15       Impact factor: 4.068

6.  Data mining of magnetocardiograms for prediction of ischemic heart disease.

Authors:  Yosawin Kangwanariyakul; Chanin Nantasenamat; Tanawut Tantimongcolwat; Thanakorn Naenna
Journal:  EXCLI J       Date:  2010-06-30       Impact factor: 4.068

7.  Support vector regression-guided unravelling: antioxidant capacity and quantitative structure-activity relationship predict reduction and promotion effects of flavonoids on acrylamide formation.

Authors:  Mengmeng Huang; Yan Wei; Jun Wang; Yu Zhang
Journal:  Sci Rep       Date:  2016-09-02       Impact factor: 4.379

8.  Elucidating the structure-activity relationships of the vasorelaxation and antioxidation properties of thionicotinic acid derivatives.

Authors:  Supaluk Prachayasittikul; Orapin Wongsawatkul; Apilak Worachartcheewan; Chanin Nantasenamat; Somsak Ruchirawat; Virapong Prachayasittikul
Journal:  Molecules       Date:  2010-01-06       Impact factor: 4.411

9.  Copper complexes of nicotinic-aromatic carboxylic acids as superoxide dismutase mimetics.

Authors:  Thummaruk Suksrichavalit; Supaluk Prachayasittikul; Theeraphon Piacham; Chartchalerm Isarankura-Na-Ayudhya; Chanin Nantasenamat; Virapong Prachayasittikul
Journal:  Molecules       Date:  2008-12-08       Impact factor: 4.411

10.  Modeling the LPS neutralization activity of anti-endotoxins.

Authors:  Chadinee Thippakorn; Thummaruk Suksrichavalit; Chanin Nantasenamat; Tanawut Tantimongcolwat; Chartchalerm Isarankura-Na-Ayudhya; Thanakorn Naenna; Virapong Prachayasittikul
Journal:  Molecules       Date:  2009-05-20       Impact factor: 4.411

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.