Literature DB >> 1849797

Protein-DNA cross-linking demonstrates stepwise ATP-dependent assembly of T4 DNA polymerase and its accessory proteins on the primer-template.

T L Capson1, S J Benkovic, N G Nossal.   

Abstract

T4 DNA polymerase, the 44/62 and 45 polymerase accessory proteins, and 32 single-stranded DNA-binding protein catalyze ATP-dependent DNA synthesis. Using DNA primers with cross-linkable residues at specific positions, we obtained structural data that reveal how these proteins assemble on the primer-template. With the nonhydrolyzable ATP analog ATP gamma S, assembly of the 44/62 and 45 proteins on the primer requires 32 protein but not polymerase. ATP hydrolysis changes the position and intensity of cross-linking to each of the accessory proteins and allows cross-linking of polymerase. Our data indicate that the initial binding of the three accessory proteins and ATP to a 32 protein-covered primer-template is followed by ATP hydrolysis, binding of polymerase, and movement of the accessory proteins to yield a complex capable of processive DNA synthesis.

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Year:  1991        PMID: 1849797     DOI: 10.1016/0092-8674(91)90159-v

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  24 in total

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Authors:  M Chen; Z Q Pan; J Hurwitz
Journal:  Proc Natl Acad Sci U S A       Date:  1992-04-01       Impact factor: 11.205

3.  Processivity clamp gp45 and ssDNA-binding-protein gp32 modulate the fidelity of bacteriophage RB69 DNA polymerase in a sequence-specific manner, sometimes enhancing and sometimes compromising accuracy.

Authors:  Anna Bebenek; Geraldine T Carver; Farid A Kadyrov; Grace E Kissling; John W Drake
Journal:  Genetics       Date:  2005-02-03       Impact factor: 4.562

4.  A direct interaction between a DNA-tracking protein and a promoter recognition protein: implications for searching DNA sequence.

Authors:  R L Tinker-Kulberg; T J Fu; E P Geiduschek; G A Kassavetis
Journal:  EMBO J       Date:  1996-09-16       Impact factor: 11.598

5.  How a holoenzyme for DNA replication is formed.

Authors:  Senthil K Perumal; Wenhui Ren; Tae-Hee Lee; Stephen J Benkovic
Journal:  Proc Natl Acad Sci U S A       Date:  2012-12-17       Impact factor: 11.205

Review 6.  Replication clamps and clamp loaders.

Authors:  Mark Hedglin; Ravindra Kumar; Stephen J Benkovic
Journal:  Cold Spring Harb Perspect Biol       Date:  2013-04-01       Impact factor: 10.005

7.  Monitoring the spatiotemporal dynamics of proteins at replication forks and in assembled chromatin using isolation of proteins on nascent DNA.

Authors:  Bianca M Sirbu; Frank B Couch; David Cortez
Journal:  Nat Protoc       Date:  2012-03-01       Impact factor: 13.491

8.  Synthesis and evaluation of oligodeoxyribonucleotides containing an aryl(trifluoromethyl)diazirine moiety as the cross-linking probe: photoaffinity labeling of mammalian DNA polymerase beta.

Authors:  T Yamaguchi; K Suyama; K Narita; S Kohgo; A Tomikawa; M Saneyoshi
Journal:  Nucleic Acids Res       Date:  1997-06-15       Impact factor: 16.971

9.  Recognition of a Key Anchor Residue by a Conserved Hydrophobic Pocket Ensures Subunit Interface Integrity in DNA Clamps.

Authors:  Senthil K Perumal; Xiaojun Xu; Chunli Yan; Ivaylo Ivanov; Stephen J Benkovic
Journal:  J Mol Biol       Date:  2019-04-30       Impact factor: 5.469

Review 10.  Transcription of the T4 late genes.

Authors:  E Peter Geiduschek; George A Kassavetis
Journal:  Virol J       Date:  2010-10-28       Impact factor: 4.099

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