Literature DB >> 18496839

Thermodynamics of T-cell receptor-peptide/MHC interactions: progress and opportunities.

Kathryn M Armstrong1, Francis K Insaidoo, Brian M Baker.   

Abstract

alphabeta T-cell receptors (TCRs) recognize peptide antigens presented by class I or class II major histocompatibility complex molecules (pMHC). Here we review the use of thermodynamic measurements in the study of TCR-pMHC interactions, with attention to the diversity in binding thermodynamics and how this is related to the variation in TCR-pMHC interfaces. We show that there is no enthalpic or entropic signature for TCR binding; rather, enthalpy and entropy changes vary in a compensatory manner that reflects a narrow free energy window for the interactions that have been characterized. Binding enthalpy and entropy changes do not correlate with structural features such as buried surface area or the number of hydrogen bonds within TCR-pMHC interfaces, possibly reflecting the myriad of contributors to binding thermodynamics, but likely also reflecting a reliance on van't Hoff over calorimetric measurements and the unaccounted influence of equilibria linked to binding. TCR-pMHC binding heat capacity changes likewise vary considerably. In some cases, the heat capacity changes are consistent with conformational differences between bound and free receptors, but there is little data indicating these conformational differences represent the need to organize disordered CDR loops. In this regard, we discuss how thermodynamics may provide additional insight into conformational changes occurring upon TCR binding. Finally, we highlight opportunities for the further use of thermodynamic measurements in the study of TCR-pMHC interactions, not only for understanding TCR binding in general, but also for understanding specifics of individual interactions and the engineering of TCRs with desired molecular recognition properties.

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Year:  2008        PMID: 18496839      PMCID: PMC3674762          DOI: 10.1002/jmr.896

Source DB:  PubMed          Journal:  J Mol Recognit        ISSN: 0952-3499            Impact factor:   2.137


  108 in total

1.  A T cell receptor CDR3beta loop undergoes conformational changes of unprecedented magnitude upon binding to a peptide/MHC class I complex.

Authors:  Jean Baptiste Reiser; Claude Grégoire; Claudine Darnault; Thomas Mosser; Annick Guimezanes; Anne Marie Schmitt-Verhulst; Juan Carlos Fontecilla-Camps; Gilbert Mazza; Bernard Malissen; Dominique Housset
Journal:  Immunity       Date:  2002-03       Impact factor: 31.745

2.  TCRs with high affinity for foreign pMHC show self-reactivity.

Authors:  Phillip D Holler; Lukasz K Chlewicki; David M Kranz
Journal:  Nat Immunol       Date:  2002-12-09       Impact factor: 25.606

Review 3.  T cell receptors: affinities, cross-reactivities, and a conformer model.

Authors:  Phillip D Holler; David M Kranz
Journal:  Mol Immunol       Date:  2004-02       Impact factor: 4.407

4.  Single MHC mutation eliminates enthalpy associated with T cell receptor binding.

Authors:  Peter J Miller; Yael Pazy; Brian Conti; David Riddle; Ettore Appella; Edward J Collins
Journal:  J Mol Biol       Date:  2007-07-26       Impact factor: 5.469

5.  How a single T cell receptor recognizes both self and foreign MHC.

Authors:  Leremy A Colf; Alexander J Bankovich; Nicole A Hanick; Natalie A Bowerman; Lindsay L Jones; David M Kranz; K Christopher Garcia
Journal:  Cell       Date:  2007-04-06       Impact factor: 41.582

Review 6.  Polyspecificity of T cell and B cell receptor recognition.

Authors:  Kai W Wucherpfennig; Paul M Allen; Franco Celada; Irun R Cohen; Rob De Boer; K Christopher Garcia; Byron Goldstein; Ralph Greenspan; David Hafler; Philip Hodgkin; Erik S Huseby; David C Krakauer; David Nemazee; Alan S Perelson; Clemencia Pinilla; Roland K Strong; Eli E Sercarz
Journal:  Semin Immunol       Date:  2007-03-29       Impact factor: 11.130

7.  X-ray crystal structure of HLA-DR4 (DRA*0101, DRB1*0401) complexed with a peptide from human collagen II.

Authors:  A Dessen; C M Lawrence; S Cupo; D M Zaller; D C Wiley
Journal:  Immunity       Date:  1997-10       Impact factor: 31.745

8.  Evaluation of linked protonation effects in protein binding reactions using isothermal titration calorimetry.

Authors:  B M Baker; K P Murphy
Journal:  Biophys J       Date:  1996-10       Impact factor: 4.033

9.  Possible origin of differences between van't Hoff and calorimetric enthalpy estimates.

Authors:  J B Chaires
Journal:  Biophys Chem       Date:  1997-02-28       Impact factor: 2.352

10.  Structural basis of plasticity in T cell receptor recognition of a self peptide-MHC antigen.

Authors:  K C Garcia; M Degano; L R Pease; M Huang; P A Peterson; L Teyton; I A Wilson
Journal:  Science       Date:  1998-02-20       Impact factor: 47.728

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  39 in total

1.  Loss of T cell antigen recognition arising from changes in peptide and major histocompatibility complex protein flexibility: implications for vaccine design.

Authors:  Francis K Insaidoo; Oleg Y Borbulevych; Moushumi Hossain; Sujatha M Santhanagopolan; Tiffany K Baxter; Brian M Baker
Journal:  J Biol Chem       Date:  2011-09-21       Impact factor: 5.157

2.  Disparate degrees of hypervariable loop flexibility control T-cell receptor cross-reactivity, specificity, and binding mechanism.

Authors:  Daniel R Scott; Oleg Y Borbulevych; Kurt H Piepenbrink; Steven A Corcelli; Brian M Baker
Journal:  J Mol Biol       Date:  2011-10-12       Impact factor: 5.469

3.  Germ line-governed recognition of a cancer epitope by an immunodominant human T-cell receptor.

Authors:  David K Cole; Fang Yuan; Pierre J Rizkallah; John J Miles; Emma Gostick; David A Price; George F Gao; Bent K Jakobsen; Andrew K Sewell
Journal:  J Biol Chem       Date:  2009-07-15       Impact factor: 5.157

4.  Methods for quantifying T cell receptor binding affinities and thermodynamics.

Authors:  Kurt H Piepenbrink; Brian E Gloor; Kathryn M Armstrong; Brian M Baker
Journal:  Methods Enzymol       Date:  2009-11-13       Impact factor: 1.600

5.  Microfluidic platform for characterizing TCR-pMHC interactions.

Authors:  Max A Stockslager; Josephine Shaw Bagnall; Vivian C Hecht; Kevin Hu; Edgar Aranda-Michel; Kristofor Payer; Robert J Kimmerling; Scott R Manalis
Journal:  Biomicrofluidics       Date:  2017-11-14       Impact factor: 2.800

6.  A study of CDR3 loop dynamics reveals distinct mechanisms of peptide recognition by T-cell receptors exhibiting different levels of cross-reactivity.

Authors:  Yuko Tsuchiya; Yoshiki Namiuchi; Hiroshi Wako; Hiromichi Tsurui
Journal:  Immunology       Date:  2017-11-08       Impact factor: 7.397

7.  Conformational changes within the HLA-A1:MAGE-A1 complex induced by binding of a recombinant antibody fragment with TCR-like specificity.

Authors:  Pravin Kumar; Ardeschir Vahedi-Faridi; Wolfram Saenger; Andreas Ziegler; Barbara Uchanska-Ziegler
Journal:  Protein Sci       Date:  2009-01       Impact factor: 6.725

8.  TCR scanning of peptide/MHC through complementary matching of receptor and ligand molecular flexibility.

Authors:  William F Hawse; Soumya De; Alex I Greenwood; Linda K Nicholson; Jaroslav Zajicek; Evgenii L Kovrigin; David M Kranz; K Christopher Garcia; Brian M Baker
Journal:  J Immunol       Date:  2014-02-12       Impact factor: 5.422

9.  Differential temperature-dependent multimeric assemblies of replication and repair polymerases on DNA increase processivity.

Authors:  Hsiang-Kai Lin; Susan F Chase; Thomas M Laue; Linda Jen-Jacobson; Michael A Trakselis
Journal:  Biochemistry       Date:  2012-09-06       Impact factor: 3.162

Review 10.  Conformational changes and flexibility in T-cell receptor recognition of peptide-MHC complexes.

Authors:  Kathryn M Armstrong; Kurt H Piepenbrink; Brian M Baker
Journal:  Biochem J       Date:  2008-10-15       Impact factor: 3.857

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