Literature DB >> 18491921

The sulfurtransferase activity of Uba4 presents a link between ubiquitin-like protein conjugation and activation of sulfur carrier proteins.

Jennifer Schmitz1, Mita Mullick Chowdhury, Petra Hänzelmann, Manfred Nimtz, Eun-Young Lee, Hermann Schindelin, Silke Leimkühler.   

Abstract

Because of mechanistic parallels in the activation of ubiquitin and the biosynthesis of several sulfur-containing cofactors, we have characterized the human Urm1 and Saccharomyces cerevisiae Uba4 proteins, which are very similar in sequence to MOCS2A and MOCS3, respectively, two proteins essential for the biosynthesis of the molybdenum cofactor (Moco) in humans. Phylogenetic analyses of MOCS3 homologues showed that Uba4 is the MOCS3 homologue in yeast and thus the only remaining protein of the Moco biosynthetic pathway in this organism. Because of the high levels of sequence identity of human MOCS3 and yeast Uba4, we purified Uba4 and characterized the catalytic activity of the protein in detail. We demonstrate that the C-terminal domain of Uba4, like MOCS3, has rhodanese activity and is able to transfer the sulfur from thiosulfate to cyanide in vitro. In addition, we were able to copurify stable heterotetrameric complexes of Uba4 with both human Urm1 and MOCS2A. The N-terminal domain of Uba4 catalyzes the activation of either MOCS2A or Urm1 by formation of an acyl-adenylate bond. After adenylation, persulfurated Uba4 was able to form a thiocarboxylate group at the C-terminal glycine of either Urm1 or MOCS2A. The formation of a thioester intermediate between Uba4 and Urm1 or MOCS2A was not observed. The functional similarities between Uba4 and MOCS3 further demonstrate the evolutionary link between ATP-dependent protein conjugation and ATP-dependent cofactor sulfuration.

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Year:  2008        PMID: 18491921     DOI: 10.1021/bi800477u

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  46 in total

Review 1.  Urm1 at the crossroad of modifications. 'Protein Modifications: Beyond the Usual Suspects' Review Series.

Authors:  Patrick G A Pedrioli; Sebastian Leidel; Kay Hofmann
Journal:  EMBO Rep       Date:  2008-12       Impact factor: 8.807

2.  A functional proteomics approach links the ubiquitin-related modifier Urm1 to a tRNA modification pathway.

Authors:  Christian D Schlieker; Annemarthe G Van der Veen; Jadyn R Damon; Eric Spooner; Hidde L Ploegh
Journal:  Proc Natl Acad Sci U S A       Date:  2008-11-18       Impact factor: 11.205

3.  Crystal structure of YnjE from Escherichia coli, a sulfurtransferase with three rhodanese domains.

Authors:  Petra Hänzelmann; Jan U Dahl; Jochen Kuper; Alexander Urban; Ursula Müller-Theissen; Silke Leimkühler; Hermann Schindelin
Journal:  Protein Sci       Date:  2009-12       Impact factor: 6.725

4.  Urm1 couples sulfur transfer to ubiquitin-like protein function in oxidative stress.

Authors:  Matthew D Petroski; Guy S Salvesen; Dieter A Wolf
Journal:  Proc Natl Acad Sci U S A       Date:  2011-01-18       Impact factor: 11.205

5.  A tRNA modification balances carbon and nitrogen metabolism by regulating phosphate homeostasis.

Authors:  Ritu Gupta; Adhish S Walvekar; Shun Liang; Zeenat Rashida; Premal Shah; Sunil Laxman
Journal:  Elife       Date:  2019-07-01       Impact factor: 8.140

6.  Arabidopsis molybdopterin biosynthesis protein Cnx5 collaborates with the ubiquitin-like protein Urm11 in the thio-modification of tRNA.

Authors:  Yumi Nakai; Akiko Harada; Yasuyuki Hashiguchi; Masato Nakai; Hideyuki Hayashi
Journal:  J Biol Chem       Date:  2012-07-18       Impact factor: 5.157

7.  Ubiquitin-related modifier Urm1 acts as a sulphur carrier in thiolation of eukaryotic transfer RNA.

Authors:  Sebastian Leidel; Patrick G A Pedrioli; Tamara Bucher; Renée Brost; Michael Costanzo; Alexander Schmidt; Ruedi Aebersold; Charles Boone; Kay Hofmann; Matthias Peter
Journal:  Nature       Date:  2009-01-14       Impact factor: 49.962

Review 8.  Prokaryotic ubiquitin-like protein modification.

Authors:  Julie A Maupin-Furlow
Journal:  Annu Rev Microbiol       Date:  2014-05-29       Impact factor: 15.500

9.  Mechanistic insight into protein modification and sulfur mobilization activities of noncanonical E1 and associated ubiquitin-like proteins of Archaea.

Authors:  Nathaniel L Hepowit; Ian Mitchelle S de Vera; Shiyun Cao; Xian Fu; Yifei Wu; Sivakumar Uthandi; Nikita E Chavarria; Markus Englert; Dan Su; Dieter Sӧll; Douglas J Kojetin; Julie A Maupin-Furlow
Journal:  FEBS J       Date:  2016-10       Impact factor: 5.542

10.  Ubiquitin-like small archaeal modifier proteins (SAMPs) in Haloferax volcanii.

Authors:  Matthew A Humbard; Hugo V Miranda; Jae-Min Lim; David J Krause; Jonathan R Pritz; Guangyin Zhou; Sixue Chen; Lance Wells; Julie A Maupin-Furlow
Journal:  Nature       Date:  2010-01-07       Impact factor: 49.962

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