Literature DB >> 18491309

Cardiovascular GO annotation initiative year 1 report: why cardiovascular GO?

Ruth C Lovering1, Emily Dimmer, Varsha K Khodiyar, Daniel G Barrell, Peter Scambler, Mike Hubank, Rolf Apweiler, Philippa J Talmud.   

Abstract

Gene Ontology (GO) vocabularies are an established standard for linking functional information to genes and gene products (www.geneontology.org/). A recent collaboration between University College London and the European Bioinformatics Institute is providing GO annotation to human cardiovascular-associated genes (http://www.ucl.ac.uk/medicine/cardiovascular-genetics/geneontology.html). This report outlines the aims of this collaboration and summarizes how the cardiovascular community can help improve the quality and quantity of GO annotations. This new initiative is funded by the British Heart Foundation and fully supported by the GO Consortium.

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Year:  2008        PMID： 18491309     DOI： 10.1002/pmic.200800078

Source DB:  PubMed          Journal:  Proteomics        ISSN： 1615-9853            Impact factor:   3.984


  10 in total

Review 1.  Access to immunology through the Gene Ontology.

Authors:  Ruth C Lovering; Evelyn B Camon; Judith A Blake; Alexander D Diehl
Journal:  Immunology       Date:  2008-10       Impact factor: 7.397

2.  Trapping cardiac recessive mutants via expression-based insertional mutagenesis screening.

Authors:  Yonghe Ding; Weibin Liu; Yun Deng; Beninio Jomok; Jingchun Yang; Wei Huang; Karl J Clark; Tao P Zhong; Xueying Lin; Stephen C Ekker; Xiaolei Xu
Journal:  Circ Res       Date:  2013-01-02       Impact factor: 17.367

3.  The representation of heart development in the gene ontology.

Authors:  Varsha K Khodiyar; David P Hill; Doug Howe; Tanya Z Berardini; Susan Tweedie; Philippa J Talmud; Ross Breckenridge; Shoumo Bhattarcharya; Paul Riley; Peter Scambler; Ruth C Lovering
Journal:  Dev Biol       Date:  2011-03-17       Impact factor: 3.582

4.  Neonatal DNA methylation profile in human twins is specified by a complex interplay between intrauterine environmental and genetic factors, subject to tissue-specific influence.

Authors:  Lavinia Gordon; Jihoon E Joo; Joseph E Powell; Miina Ollikainen; Boris Novakovic; Xin Li; Roberta Andronikos; Mark N Cruickshank; Karen N Conneely; Alicia K Smith; Reid S Alisch; Ruth Morley; Peter M Visscher; Jeffrey M Craig; Richard Saffery
Journal:  Genome Res       Date:  2012-07-16       Impact factor: 9.043

5.  The impact of focused Gene Ontology curation of specific mammalian systems.

Authors:  Yasmin Alam-Faruque; Rachael P Huntley; Varsha K Khodiyar; Evelyn B Camon; Emily C Dimmer; Tony Sawford; Maria J Martin; Claire O'Donovan; Philippa J Talmud; Peter Scambler; Rolf Apweiler; Ruth C Lovering
Journal:  PLoS One       Date:  2011-12-09       Impact factor: 3.240

6.  The GOA database: gene Ontology annotation updates for 2015.

Authors:  Rachael P Huntley; Tony Sawford; Prudence Mutowo-Meullenet; Aleksandra Shypitsyna; Carlos Bonilla; Maria J Martin; Claire O'Donovan
Journal:  Nucleic Acids Res       Date:  2014-11-06       Impact factor: 19.160

Review 7.  Improvements to cardiovascular gene ontology.

Authors:  Ruth C Lovering; Emily C Dimmer; Philippa J Talmud
Journal:  Atherosclerosis       Date:  2008-11-01       Impact factor: 5.162

8.  The GOA database in 2009--an integrated Gene Ontology Annotation resource.

Authors:  Daniel Barrell; Emily Dimmer; Rachael P Huntley; David Binns; Claire O'Donovan; Rolf Apweiler
Journal:  Nucleic Acids Res       Date:  2008-10-27       Impact factor: 16.971

9.  Improving Interpretation of Cardiac Phenotypes and Enhancing Discovery With Expanded Knowledge in the Gene Ontology.

Authors:  Ruth C Lovering; Paola Roncaglia; Douglas G Howe; Stanley J F Laulederkind; Varsha K Khodiyar; Tanya Z Berardini; Susan Tweedie; Rebecca E Foulger; David Osumi-Sutherland; Nancy H Campbell; Rachael P Huntley; Philippa J Talmud; Judith A Blake; Ross Breckenridge; Paul R Riley; Pier D Lambiase; Perry M Elliott; Lucie Clapp; Andrew Tinker; David P Hill
Journal:  Circ Genom Precis Med       Date:  2018-02

10.  Proteomic Analysis of Liver from Human Lipoprotein(a) Transgenic Mice Shows an Oxidative Stress and Lipid Export Response.

Authors:  Euan J Rodger; Carolyn M Porteous; Gregory T Jones; Michael Legge; Torsten Kleffmann; Sally P A McCormick
Journal:  Biomed Res Int       Date:  2018-11-25       Impact factor: 3.411
  10 in total

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