| Literature DB >> 18490989 |
Barrie E Overton1, Elwin L Stewart, David M Geiser.
Abstract
Morphological studies and phylogenetic analyses of DNA sequences from the internal transcribed spacer (ITS) regions of the nuclear ribosomal gene repeat, a partial sequence of RNA polymerase II subunit (rpb2), and a partial sequence of the large exon of tef1 (LEtef1) were used to investigate the taxonomy and systematics of nine Hypocrea species with anamorphs assignable to Trichoderma sect. Hypocreanum. Hypocrea corticioides and H. sulphurea are reevaluated. Their Trichoderma anamorphs are described and the phylogenetic positions of these species are determined. Hypocrea sulphurea and H. subcitrina are distinct species based on studies of the type specimens. Hypocrea egmontensis is a facultative synonym of the older name H. subcitrina. Hypocrea with anamorphs assignable to Trichoderma sect. Hypocreanum formed a well-supported clade. Five species with anamorphs morphologically similar to sect. Hypocreanum, H. avellanea, H. parmastoi, H. megalocitrina, H. alcalifuscescens, and H. pezizoides, are not located in this clade. Protocrea farinosa belongs to Hypocrea s.s.Entities:
Year: 2006 PMID: 18490989 PMCID: PMC2104734 DOI: 10.3114/sim.2006.56.02
Source DB: PubMed Journal: Stud Mycol ISSN: 0166-0616 Impact factor: 16.097
Isolates used in molecular phylogenetic analyses. (* = ex-type strain).
| G.J.S. 94-20 | Tushar Mountains, Utah, U.S.A. | DQ835409 | DQ835485 | DQ835451 | |
| G.J.S. 92-127 | Olympia National Park, Washington, U.S.A. | AF487666 | DQ835484 | DQ835461 | |
| G.J.S. 98-104 | Naturpark Saar-Hundsrück, Germany | AF487665 | DQ835490 | AF545559 | |
| G.J.S. 95-220 | Waldviertel, Lower Austria, Austria | DQ835407 | DQ835486 | DQ835452 | |
| G.J.S. 92-93 | New Mexico, U.S.A. | DQ835410 | DQ835489 | DQ835455 | |
| G.J.S. 94-79 | White Mountains, Arizona, U.S.A. | DQ835408 | DQ835491 | DQ835456 | |
| K.P. 00-56 | Unknown, U.S.A. | DQ835406 | DQ835488 | DQ835453 | |
| Chiba Pref., Kiyosumi, Fudagou, Japan | DQ835405 | DQ835487 | DQ835463 | ||
| G.J.S. 95-183 | Daniel Boone National Forest, Kentucky, U.S.A. | DQ835413 | DQ835469 | DQ835458 | |
| B.E.O. 99-29 | Oswego County, New York, U.S.A. | DQ835412 | DQ835482 | DQ835464 | |
| G.J.S. 89-145 | Devon, Budleigh, Saltaton, U.K. | DQ835414 | DQ835483 | DQ835457 | |
| G.J.S. 96-275 | Ascutung, Vermont, U.S.A. | DQ835418 | - | - | |
| Baam, Zandheuvelweg, Netherlands | DQ835415 | - | - | ||
| Pelmer Wald near Gerolstein, Germany | DQ835416 | - | - | ||
| Hestreux near Eupen, Belgium | DQ835417 | DQ835481 | AF545561 | ||
| G.J.S. 91-135 | Prince Georges County, Maryland, U.S.A. | DQ835419 | - | - | |
| G.J.S. 90-74 | Dutches County, New York, U.S.A. | DQ835420 | DQ835470 | DQ835454 | |
| G.J.S. 95-169 | Daniel Boon National Forest, Kentucky, U.S.A. | DQ835421 | - | - | |
| G.J.S. 95-189 | Brown County, Indiana, U.S.A. | DQ835422 | DQ835480 | DQ835459 | |
| B.E.O. 99-36 | Patapsco State Park, Maryland, U.S.A. | DQ835423 | DQ835468 | DQ835465 | |
| B.E.O. 00-09 | North Carolina, U.S.A. | DQ835511 | AY225855 | AF545563 | |
| G.J.S. 97-248 | Georgia, U.S.A. | DQ835424 | DQ835479 | DQ835462 | |
| G.J.S. 91-61 | Virginia, U.S.A. | DQ835426 | DQ835478 | DQ835460 | |
| G.J.S. 95-190 | Indiana, U.S.A. | DQ835425 | AY225858 | AF545560 | |
| G.J.S. 95-140 | Styria, Austria | AF487664 | DQ835471 | DQ835515 | |
| G.J.S. 00-172 | Moscow, Russia | DQ835510 | DQ835493 | DQ835523 | |
| G.J.S. 99-130 | Victoria, Australia | DQ835504 | DQ835472 | DQ835516 | |
| G.J.S. 99-200* | Victoria, Australia | DQ835505 | DQ835473 | DQ835517 | |
| New Zealand | DQ835466 | - | - | ||
| G.J.S. 99-61 | Limon, Costa Rica | DQ835467 | DQ835474 | DQ835518 | |
| M 141 | Kurokami Kumamoto, Japan | DQ835509 | DQ835492 | DQ835522 | |
| G.J.S. 91-101 | Maryland, U.S.A. | DQ835507 | DQ835476 | DQ835520 | |
| G.J.S. 89-139 | Unknown mushroom farm, U.S.A. | DQ835508 | DQ835477 | DQ835521 | |
| B.E.O. 99-16 | Maryland, U.S.A. | DQ835506 | DQ835475 | DQ835519 | |
| TFC 181548* | Estonia | - | DQ834455 | DQ834462 | |
| TFC 97-143* | Voru Commune, Estonia | - | DQ834456 | DQ834463 | |
| C.T.R. 77-155* | Type locality, Massachusetts, U.S.A. | - | AY225857 | AF545562 | |
| G.J.S. 01-265 | Thailand | DQ835512 | DQ835494 | DQ835524 | |
| G.J.S. 01-231 | Unknown | DQ835513 | AY225859 | AF545564 | |
| G.J.S. 92-102 | Unknown | - | DQ834454 | DQ834461 | |
| HY8 ( | Switzerland | - | AF534584 | AF545520 | |
| G.J.S. 89-127 | North Carolina, U.S.A. | - | AF534585 | AF545521 | |
| Yorkshire, U.K. | - | AF534583 | AF545519 | ||
| G.J.S. 89-129 | New York, U.S.A | - | AF534581 | AF545517 | |
| G.J.S. 89-115 | Maryland, U.S.A. | - | AF534596 | AF545528 | |
| England, U.S.A. | - | AF534575 | AF545504 | ||
| G.J.S. 99-64 | Limón, Costa Rica | - | AF534582 | AF545518 | |
| G.J.S. 01-364 | Unknown | DQ835514 | AY225860 | AF545565 | |
| DAOM 167070 | Canada | - | AF534617 | AF545545 | |
| United Kingdom | - | AF534614 | AF545541 | ||
| DAOM 167652 | Georgia, U.S.A. | - | AF534619 | AF545547 | |
| P.C. 209 | Brazil | - | AF534613 | AF545539 | |
| B.E.O. 02-01 | New York, U.S.A. | - | DQ834457 | DQ834458 | |
| G.J.S. 74-87 | New Zealand | - | DQ834452 | DQ834460 | |
| G.J.S. 82-40 | New Zealand | - | DQ834453 | DQ834459 | |
Results of the Kishino-Hasegawa likelihood test
| Unconstrained | 1 | 14817.41 | Best |
| Monophyletic | 5 | 15048.56-15048.67 | <0.0001* |
| Monophyletic Hyphal | 1 | 15156.58 | <0.0001* |
Probability of getting a more extreme T-value under the null hypothesis of no difference between the two trees (two-tailed test); indicates significance at P < 0.05.
The best —In likelihood tree from the maximum parsimony analysis.
Fig. 1.Parsimony analysis of ITS. One phylogram of 3193 most parsimonious trees; 217 steps; consistency index 0.779; retention index 0.855; homoplasy index 0.221; numerical values of branch lengths are given above and bootstrap values (500 replicates with 10 random addition replications) are indicated below branches. Outgroup taxa: H. megalocitrina; H. ochroleuca; H. pezizoides; T. cf. citrinoviride.
Fig. 2.Parsimony analysis of partial sequences of rpb2. Single most parsimonious tree; 650 steps; consistency index 0.628; retention index 0.771; homoplasy index 0.372, rest as Fig. 1.
Fig. 3.Parsimony analysis of partial sequences of LEtef1. One phylogram of 64 most parsimonious trees; 314 steps; consistency index: 0.567; retention index: 0.744; homoplasy index: 0.433, rest as Fig. 1.
Fig. 5.Parsimony analysis of the combined LEtef1 and rpb2 data set. Phylogram of one of 3 most parsimonious trees; 2469 steps; consistency index: 0.354; retention index: 0.515; homoplasy index: 0.646, rest as Fig. 1. Outgroup taxa: Hypomyces stephanomatis; Acrachnocrea scabrida; Sphaerostibella cf. aureonitens.
Fig. 4.Combined parsimony analysis of ITS, LEtef1, rpb2. Phylogram of one of three most parsimonious trees; 428 steps; consistency index: 0.626; retention index: 0.766; homoplasy index: 0.374, rest as Fig. 1.
Additional tef1 sequences deposited in GenBank.
| G.J.S. 95-190 | Indiana, U.S.A. | DQ835448 | |
| G.J.S. 95-140 | Styria, Austria | DQ835499 | |
| G.J.S. 00-172 | Moscow, Russia | DQ835495 | |
| G.J.S. 95-176 | Kentucky, U.S.A. | DQ835498 | |
| B.E.O. 98-44 | Pennsylvania, U.S.A. | DQ835496 | |
| B.E.O. 98-45 | Pennsylvania, U.S.A. | DQ835497 | |
| G.J.S. 99-200 | Victoria, Australia | DQ835500 | |
| G.J.S. 99-201 | Victoria, Australia | DQ835501 | |
| G.J.S. 99-61 | Limon, Costa Rica | DQ835502 | |
| G.J.S. 91-101 | Maryland, U.S.A. | DQ835503 |
Fig. 6.A–C. H. sulphurea. A. Stroma with KOH reaction, BPI 737764; bar = 1 mm. B. Stroma with byssoid margin, BPI 737752; bar = 1 mm. C. Stroma with KOH reaction, TNS-F-190169; bar = 1 mm.
Fig. 7.A–F. H. sulphurea. A. Section of stroma showing ostiolar papilla; bar = 20 μm. B. Section of stroma showing textura globulosa to t. angularis with t. intricata below perithecium; bar = 20 μm. C. Asci with ascospores; bar = 20 μm; A–C. BPI 737752. D. Section showing t. angularis near surface, B.E.O. 98-44. E, F. TNS-F-190169, H. sulphurea f. macrospora; E. Section through ostiole; F. asci; bars = 20 μm. G. Smooth stroma surface, BPI 747764, H. sulphurea f. sulphurea; bar = 1 mm.
Fig. 8.A–F. H. sulphurea. A. Conidia of variable size, on PDA; bar = 20 μm. B–C. Conidiophores, on PDA; bars = 20 μm; A–C. B.E.O. 98-44. D-F. Conidiophores and conidia from G.J.S. 95-140 on PDA; bars = 20 μm.
Fig. 9.A–F. H. victoriensis. A. Stroma with discharged ascospores, BPI 747361; bar = 1 mm. B. Stroma showing KOH reaction, BPI 747363; bar = 1 mm. C. Section of Stroma, showing ostiolar papillae; bar = 40 μm. D, F. Section of stroma showing t. globulosa to t. angularis; bar = 20 μm. E. Asci with spinulose ascospores; bar = 20 μm; C–E. BPI 747362.
Fig. 10.A–E. H. victoriensis. A–C. Irregular verticillium-like conidiophore branching pattern; bars = 20 μm. D. Conidiophore, G. J. S. 99-201; bar = 20 μm. E. Conidia; bar = 20 μm; A–C, E. G.J.S. 99-200.
Fig. 11.A–F. H. eucorticioides. A. Effuse stromata with irregular margins, NY 29223; bar = 1 mm. B. Effuse stromata with irregular margins showing reaction in KOH, BPI 747358; bar = 1 mm. C. Asci with subglobose part-ascospores, BPI 747358; bar = 20 μm. D. Asci with subglobose part-ascospores, NY 29223; bar = 20 μm. E–F. Section of stroma showing t. globulosa to t. angularis tissue, BPI 747358; bar = 20 μm.
Fig. 12.A–D. H. eucorticioides, G.J.S. 99-61. A. Irregular verticillium-like branching pattern; bar = 40 μm. B–D. Phialides with developing conidia; bar = 20 μm.
Fig. 13.A–D. H. subsulphurea, M 141. A–B. Perithecia forming on old stromata; bar = 1 mm. C. Asci and ascospores from old stroma; bar = 20 μm. D. Asci and ascospores from perithecia developing on old stroma surface; bar = 20 μm. Note: repeated attempts to section perithecia in old and developing stromata have failed.
Fig. 14.A–D. H. subsulphurea, M. 141. A–B. Irregular verticillium-like branching pattern, on PDA; bar = 40 μm. C. Phialides with developing conidia, on PDA; bar = 20 μm. D. Conidia, variable in size, on PDA; bar = 20 μm.
Fig. 15.A–D. H. farinosa. A. Effuse extensive stroma, BPI 802598. B. Effuse extensive stroma, BPI 747356. C. Colour variation in stroma, BPI 737771. D. KOH reaction, BPI 802598. bars = 1 mm.
Fig. 16.A–H. H. farinosa. A. Section of stroma; note the layer of t. intricata near the stroma surface and loose layer of pseudoparenchymatous tissue near the base of the perithecium; bar = 40 μm. B. asci and part-ascospores, both of BPI 802598, bar = 20 μm. C. Section of stroma; bar = 40 μm. D–E. Textura intricata near stroma surface and t. globulosa to t. angularis below perithecium, notably different from that shown in A; bar = 20 μm. C–E. BPI 112870. F–G. Conidiophores and developing conidia, on PDA; bars = 20 μm. H. Conidia on PDA; bar = 40 μm; F–H. G.J.S. 89-139.
Fig. 17.A–F. H. alcalifuscescens, TAA 181584. A. Stroma showing reaction in KOH; bar = 1 mm. B. Section of stroma showing compact t. intricata and KOH-positive layer of stroma tissue; bar = 20 μm. C. Asci and ascospores; bar = 20 μm. D. Conidia; bar = 20 μm. E–F. Conidiophore branching pattern; bars = 40 μm, and 20 μm, respectively; D–F. TFC 181584. Note: in spite of several attempts, no illustrative sections of perithecia were obtained.
Fig. 18.A–F. H. parmastoi. A–B. Stroma; bars = 1 mm and 20 μm, respectively. C. Asci and ascospores; bar = 20 μm; A–C. TAA 169055. D, F. Conidiophores on PDA; bar = 20 μm. E. Conidiophores on CMD; bar = 40 μm; D–F. TFC 97-143. Note: in spite of several attempts, no illustrative sections of perithecia were obtained.