Literature DB >> 18482995

qpcR: an R package for sigmoidal model selection in quantitative real-time polymerase chain reaction analysis.

Christian Ritz1, Andrej-Nikolai Spiess.   

Abstract

UNLABELLED: The qpcR library is an add-on to the free R statistical environment performing sigmoidal model selection in real-time quantitative polymerase chain reaction (PCR) data analysis. Additionally, the package implements the most commonly used algorithms for real-time PCR data analysis and is capable of extensive statistical comparison for the selection and evaluation of the different models based on several measures of goodness of fit. AVAILABILITY: www.dr-spiess.de/qpcR.html. SUPPLEMENTARY INFORMATION: Statistical evaluations of the implemented methods can be found at www.dr-spiess.de under 'Supplemental Data'.

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Year:  2008        PMID: 18482995     DOI: 10.1093/bioinformatics/btn227

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  127 in total

1.  Persistent Hg contamination and occurrence of Hg-methylating transcript (hgcA) downstream of a chlor-alkali plant in the Olt River (Romania).

Authors:  Andrea G Bravo; Jean-Luc Loizeau; Perrine Dranguet; Stamatina Makri; Erik Björn; Viorel Gh Ungureanu; Vera I Slaveykova; Claudia Cosio
Journal:  Environ Sci Pollut Res Int       Date:  2015-12-11       Impact factor: 4.223

2.  A 'slow pace of life' in Australian old-endemic passerine birds is not accompanied by low basal metabolic rates.

Authors:  Claus Bech; Mark A Chappell; Lee B Astheimer; Gustavo A Londoño; William A Buttemer
Journal:  J Comp Physiol B       Date:  2016-02-13       Impact factor: 2.200

3.  Poldip2 deficiency protects against lung edema and vascular inflammation in a model of acute respiratory distress syndrome.

Authors:  Steven J Forrester; Qian Xu; Daniel S Kikuchi; Derick Okwan-Duodu; Ana Carolina Campos; Elizabeth A Faidley; Guogang Zhang; Bernard Lassègue; Ruxana T Sadikot; Kathy K Griendling; Marina S Hernandes
Journal:  Clin Sci (Lond)       Date:  2019-01-25       Impact factor: 6.124

4.  Maternal Multiple Micronutrient Supplementation Stabilizes Mitochondrial DNA Copy Number in Pregnant Women in Lombok, Indonesia.

Authors:  Lidwina Priliani; Elizabeth L Prado; Restuadi Restuadi; Diana E Waturangi; Anuraj H Shankar; Safarina G Malik
Journal:  J Nutr       Date:  2019-08-01       Impact factor: 4.798

5.  Modeling qRT-PCR dynamics with application to cancer biomarker quantification.

Authors:  Inna Chervoneva; Boris Freydin; Terry Hyslop; Scott A Waldman
Journal:  Stat Methods Med Res       Date:  2017-05-14       Impact factor: 3.021

6.  Functional characterization of four metallothionein genes in Daphnia pulex exposed to environmental stressors.

Authors:  J Asselman; S P Glaholt; Z Smith; G Smagghe; C R Janssen; J K Colbourne; J R Shaw; K A C De Schamphelaere
Journal:  Aquat Toxicol       Date:  2011-12-29       Impact factor: 4.964

7.  Coronary heart disease alters intercellular communication by modifying microparticle-mediated microRNA transport.

Authors:  Nnenna A Finn; Danny Eapen; Pankaj Manocha; Hatem Al Kassem; Bernard Lassegue; Nima Ghasemzadeh; Arshed Quyyumi; Charles D Searles
Journal:  FEBS Lett       Date:  2013-09-13       Impact factor: 4.124

8.  An evaluation of R2 as an inadequate measure for nonlinear models in pharmacological and biochemical research: a Monte Carlo approach.

Authors:  Andrej-Nikolai Spiess; Natalie Neumeyer
Journal:  BMC Pharmacol       Date:  2010-06-07

9.  A biopsy sample reduction approach to identify significant alterations of the testicular transcriptome in the presence of Y-chromosomal microdeletions that are independent of germ cell composition.

Authors:  Heike Cappallo-Obermann; Kathrein von Kopylow; Wolfgang Schulze; Andrej-Nikolai Spiess
Journal:  Hum Genet       Date:  2010-07-29       Impact factor: 4.132

10.  Deciphering the role of aspartate and prephenate aminotransferase activities in plastid nitrogen metabolism.

Authors:  Fernando de la Torre; Jorge El-Azaz; Concepción Avila; Francisco M Cánovas
Journal:  Plant Physiol       Date:  2013-12-02       Impact factor: 8.340

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