Literature DB >> 18469901

Comparison and integration of four barley genetic maps.

X Qi, P Stam, P Lindhout.   

Abstract

Barley (Hordeum vulgare L.) is one of the most extensively studied food crops in recent molecular research. More than 1000 molecular markers have been located on the barley genome by using five independent populations. For the present study, four segregation data sets, 'Proctor' x 'Nudinka', 'Igri' x 'Franka', 'Steptoe' x 'Morex', and 'Harrington' x TR306, were downloaded from the publicly available GrainGenes databank. Since 22% of the markers are common to at least two of the independent data sets, we were able to establish an integrated map using the computer package JOINMAP v2.0. The integrated map contains 898 markers, covers 1060 cM, and removes many large gaps present in the individual maps. Comparison of the integrated map with the individual maps revealed that the overall linear order of markers is in good agreement and that the integrated map is consistent with the component maps. No significant reordering of markers was found. This conservative property of the barley genome makes the integrated map reliable and successful. Except for chromosome 7 (5H), marker clustering was observed in the centromeric regions, probably owing to the centromeric suppression of recombination. Based on this integrated map, geneticists and breeders can choose their favourite markers in any region of interest of the barley genome. Key words : Hordeum vulgare, RFLP, integrated map.

Entities:  

Year:  1996        PMID: 18469901     DOI: 10.1139/g96-049

Source DB:  PubMed          Journal:  Genome        ISSN: 0831-2796            Impact factor:   2.166


  48 in total

Review 1.  Chromosome regions and stress-related sequences involved in resistance to abiotic stress in Triticeae.

Authors:  Luigi Cattivell; Paolo Baldi; Cristina Crosatti; Natale Di Fonzo; Primetta Faccioli; Maria Grossi; Anna M Mastrangelo; Nicola Pecchioni; A Michele Stanca
Journal:  Plant Mol Biol       Date:  2002 Mar-Apr       Impact factor: 4.076

2.  Comparative analyses of genomic locations and race specificities of loci for quantitative resistance to Pyricularia grisea in rice and barley.

Authors:  Huilan Chen; Shiping Wang; Yongzhong Xing; Caiguo Xu; Patrick M Hayes; Qifa Zhang
Journal:  Proc Natl Acad Sci U S A       Date:  2003-02-24       Impact factor: 11.205

3.  Optimal sampling of a population to determine QTL location, variance, and allelic number.

Authors:  Xiao-Lin Wu; Jean-Luc Jannink
Journal:  Theor Appl Genet       Date:  2004-01-23       Impact factor: 5.699

4.  GrainGenes, the genome database for small-grain crops.

Authors:  David E Matthews; Victoria L Carollo; Gerard R Lazo; Olin D Anderson
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

5.  The gibberellic-acid insensitive dwarfing gene sdw3 of barley is located on chromosome 2HS in a region that shows high colinearity with rice chromosome 7L.

Authors:  S Gottwald; N Stein; A Börner; T Sasaki; A Graner
Journal:  Mol Genet Genomics       Date:  2004-03-09       Impact factor: 3.291

6.  Construction of a high-density composite map and comparative mapping of segregation distortion regions in barley.

Authors:  Haobing Li; Andrzej Kilian; Meixue Zhou; Peter Wenzl; Eric Huttner; Neville Mendham; Lynne McIntyre; René E Vaillancourt
Journal:  Mol Genet Genomics       Date:  2010-08-29       Impact factor: 3.291

7.  A composite linkage map from two crosses for the species complex Picea mariana x Picea rubens and analysis of synteny with other Pinaceae.

Authors:  Betty Pelgas; Jean Bousquet; Stéphanie Beauseigle; Nathalie Isabel
Journal:  Theor Appl Genet       Date:  2005-11-10       Impact factor: 5.699

8.  Approaching the self-incompatibility locus Z in rye (Secale cereale L.) via comparative genetics.

Authors:  B Hackauf; P Wehling
Journal:  Theor Appl Genet       Date:  2005-02-17       Impact factor: 5.699

9.  Construction of an integrated map of rose with AFLP, SSR, PK, RGA, RFLP, SCAR and morphological markers.

Authors:  Z Yan; C Denneboom; A Hattendorf; O Dolstra; T Debener; P Stam; P B Visser
Journal:  Theor Appl Genet       Date:  2005-01-26       Impact factor: 5.699

10.  Mapping of Rym14Hb, a gene introgressed from Hordeum bulbosum and conferring resistance to BaMMV and BaYMV in barley.

Authors:  B Ruge; A Linz; R Pickering; G Proeseler; P Greif; P Wehling
Journal:  Theor Appl Genet       Date:  2003-06-26       Impact factor: 5.699

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.