Literature DB >> 18462682

Partitivirus structure reveals a 120-subunit, helix-rich capsid with distinctive surface arches formed by quasisymmetric coat-protein dimers.

Wendy F Ochoa1, Wendy M Havens, Robert S Sinkovits, Max L Nibert, Said A Ghabrial, Timothy S Baker.   

Abstract

Two distinct partitiviruses, Penicillium stoloniferum viruses S and F, can be isolated from the fungus Penicillium stoloniferum. The bisegmented dsRNA genomes of these viruses are separately packaged in icosahedral capsids containing 120 coat-protein subunits. We used transmission electron cryomicroscopy and three-dimensional image reconstruction to determine the structure of Penicillium stoloniferum virus S at 7.3 A resolution. The capsid, approximately 350 A in outer diameter, contains 12 pentons, each of which is topped by five arched protrusions. Each of these protrusions is, in turn, formed by a quasisymmetric dimer of coat protein, for a total of 60 such dimers per particle. The density map shows numerous tubular features, characteristic of alpha helices and consistent with secondary structure predictions for the coat protein. This three-dimensional structure of a virus from the family Partitiviridae exhibits both similarities to and differences from the so-called "T = 2" capsids of other dsRNA viruses.

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Year:  2008        PMID: 18462682      PMCID: PMC2556151          DOI: 10.1016/j.str.2008.02.014

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  45 in total

Review 1.  The familiar and the unexpected in structures of icosahedral viruses.

Authors:  S C Harrison
Journal:  Curr Opin Struct Biol       Date:  2001-04       Impact factor: 6.809

2.  Ab initio random model method facilitates 3D reconstruction of icosahedral particles.

Authors:  Xiaodong Yan; Kelly A Dryden; Jinghua Tang; Timothy S Baker
Journal:  J Struct Biol       Date:  2006-08-11       Impact factor: 2.867

3.  AUTO3DEM--an automated and high throughput program for image reconstruction of icosahedral particles.

Authors:  Xiaodong Yan; Robert S Sinkovits; Timothy S Baker
Journal:  J Struct Biol       Date:  2006-08-25       Impact factor: 2.867

4.  Electron cryomicroscopy comparison of the architectures of the enveloped bacteriophages phi6 and phi8.

Authors:  Harri T Jäälinoja; Juha T Huiskonen; Sarah J Butcher
Journal:  Structure       Date:  2007-02       Impact factor: 5.006

5.  L-A virus at 3.4 A resolution reveals particle architecture and mRNA decapping mechanism.

Authors:  Hisashi Naitow; Jinghua Tang; Mary Canady; Reed B Wickner; John E Johnson
Journal:  Nat Struct Biol       Date:  2002-10

6.  Computational approaches for automatic structural analysis of large biomolecular complexes.

Authors:  Zeyun Yu; Chandrajit Bajaj
Journal:  IEEE/ACM Trans Comput Biol Bioinform       Date:  2008 Oct-Dec       Impact factor: 3.710

7.  An antibody to the putative aphid recognition site on cucumber mosaic virus recognizes pentons but not hexons.

Authors:  Valorie D Bowman; Elaine S Chase; Alexander W E Franz; Paul R Chipman; Xing Zhang; Keith L Perry; Timothy S Baker; Thomas J Smith
Journal:  J Virol       Date:  2002-12       Impact factor: 5.103

8.  Structure of the bacteriophage phi6 nucleocapsid suggests a mechanism for sequential RNA packaging.

Authors:  Juha T Huiskonen; Felix de Haas; Doryen Bubeck; Dennis H Bamford; Stephen D Fuller; Sarah J Butcher
Journal:  Structure       Date:  2006-06       Impact factor: 5.006

9.  Cytoplasmic polyhedrosis virus structure at 8 A by electron cryomicroscopy: structural basis of capsid stability and mRNA processing regulation.

Authors:  Z Hong Zhou; Hong Zhang; Joanita Jakana; Xing-Ying Lu; Jing-Qiang Zhang
Journal:  Structure       Date:  2003-06       Impact factor: 5.006

10.  Molecular characterization of a partitivirus from Ophiostoma himal-ulmi.

Authors:  Lauren J Crawford; Toba A M Osman; Frank P Booy; Robert H A Coutts; Clive M Brasier; Kenneth W Buck
Journal:  Virus Genes       Date:  2006-08       Impact factor: 2.198

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  23 in total

1.  Backbone trace of partitivirus capsid protein from electron cryomicroscopy and homology modeling.

Authors:  Jinghua Tang; Junhua Pan; Wendy M Havens; Wendy F Ochoa; Tom S Y Guu; Said A Ghabrial; Max L Nibert; Yizhi Jane Tao; Timothy S Baker
Journal:  Biophys J       Date:  2010-07-21       Impact factor: 4.033

2.  The T=1 capsid protein of Penicillium chrysogenum virus is formed by a repeated helix-rich core indicative of gene duplication.

Authors:  Daniel Luque; José M González; Damiá Garriga; Said A Ghabrial; Wendy M Havens; Benes Trus; Nuria Verdaguer; José L Carrascosa; José R Castón
Journal:  J Virol       Date:  2010-05-12       Impact factor: 5.103

3.  The picobirnavirus crystal structure provides functional insights into virion assembly and cell entry.

Authors:  Stéphane Duquerroy; Bruno Da Costa; Céline Henry; Armelle Vigouroux; Sonia Libersou; Jean Lepault; Jorge Navaza; Bernard Delmas; Félix A Rey
Journal:  EMBO J       Date:  2009-04-30       Impact factor: 11.598

4.  Infectious myonecrosis virus has a totivirus-like, 120-subunit capsid, but with fiber complexes at the fivefold axes.

Authors:  Jinghua Tang; Wendy F Ochoa; Robert S Sinkovits; Bonnie T Poulos; Said A Ghabrial; Donald V Lightner; Timothy S Baker; Max L Nibert
Journal:  Proc Natl Acad Sci U S A       Date:  2008-11-03       Impact factor: 11.205

5.  A new putative alphapartitivirus recovered from the powdery mildew fungus Erysiphe palczewskii.

Authors:  Guihong Xiong; Ping Qiu; Cong Li; Zhuo Chen; Saif Ul Islam; Shouguo Fang; Zujian Wu; Songbai Zhang; Zhenguo Du
Journal:  Virus Genes       Date:  2017-02-27       Impact factor: 2.332

6.  Structure of RNA polymerase complex and genome within a dsRNA virus provides insights into the mechanisms of transcription and assembly.

Authors:  Xurong Wang; Fuxian Zhang; Rui Su; Xiaowu Li; Wenyuan Chen; Qingxiu Chen; Tao Yang; Jiawei Wang; Hongrong Liu; Qin Fang; Lingpeng Cheng
Journal:  Proc Natl Acad Sci U S A       Date:  2018-06-25       Impact factor: 11.205

7.  Structure of Fusarium poae virus 1 shows conserved and variable elements of partitivirus capsids and evolutionary relationships to picobirnavirus.

Authors:  Jinghua Tang; Wendy F Ochoa; Hua Li; Wendy M Havens; Max L Nibert; Said A Ghabrial; Timothy S Baker
Journal:  J Struct Biol       Date:  2010-07-03       Impact factor: 2.867

Review 8.  3D structures of fungal partitiviruses.

Authors:  Max L Nibert; Jinghua Tang; Jiatao Xie; Aaron M Collier; Said A Ghabrial; Timothy S Baker; Yizhi J Tao
Journal:  Adv Virus Res       Date:  2013       Impact factor: 9.937

9.  The genome of Beet cryptic virus 1 shows high homology to certain cryptoviruses present in phylogenetically distant hosts.

Authors:  Anita Szego; Natalya Enünlü; Sachin D Deshmukh; Dorina Veliceasa; Eva Hunyadi-Gulyás; Thomas Kühne; Pál Ilyés; László Potyondi; Katalin Medzihradszky; Noémi Lukács
Journal:  Virus Genes       Date:  2010-04       Impact factor: 2.332

10.  A novel partitivirus that confers hypovirulence on plant pathogenic fungi.

Authors:  Xueqiong Xiao; Jiasen Cheng; Jinghua Tang; Yanping Fu; Daohong Jiang; Timothy S Baker; Said A Ghabrial; Jiatao Xie
Journal:  J Virol       Date:  2014-06-25       Impact factor: 5.103

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