Literature DB >> 18461487

Intracellular manipulation of chromatin using magnetic nanoparticles.

Johannes S Kanger1, Vinod Subramaniam, Roel van Driel.   

Abstract

Magnetic tweezers are widely used for manipulating small magnetic beads inside the cell cytoplasm in order to gain insight into the structural and mechanical properties of the cytoskeleton. Here we discuss the use of magnetic tweezers for the study of nuclear architecture and the mechanical properties of chromatin in living cells. A custom-built, dedicated micro magnetic tweezer set-up is described. We review progress that has been made in applying this technology for the study of chromatin structure and discuss its prospects for the in situ analysis of nuclear architecture and chromatin function.

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Year:  2008        PMID: 18461487     DOI: 10.1007/s10577-008-1239-1

Source DB:  PubMed          Journal:  Chromosome Res        ISSN: 0967-3849            Impact factor:   5.239


  33 in total

1.  Unfolding individual nucleosomes by stretching single chromatin fibers with optical tweezers.

Authors:  M L Bennink; S H Leuba; G H Leno; J Zlatanova; B G de Grooth; J Greve
Journal:  Nat Struct Biol       Date:  2001-07

Review 2.  To the 30-nm chromatin fiber and beyond.

Authors:  Nicholas L Adkins; Meagan Watts; Philippe T Georgel
Journal:  Biochim Biophys Acta       Date:  2004-03-15

3.  Micro-organization and visco-elasticity of the interphase nucleus revealed by particle nanotracking.

Authors:  Yiider Tseng; Jerry S H Lee; Thomas P Kole; Ingjye Jiang; Denis Wirtz
Journal:  J Cell Sci       Date:  2004-04-15       Impact factor: 5.285

4.  Direct observation of nanomechanical properties of chromatin in living cells.

Authors:  Anthony H B de Vries; Bea E Krenn; Roel van Driel; Vinod Subramaniam; Johannes S Kanger
Journal:  Nano Lett       Date:  2007-04-24       Impact factor: 11.189

Review 5.  Nuclear architecture: Is it important for genome function and can we prove it?

Authors:  Julio Mateos-Langerak; Sandra Goetze; Heinrich Leonhardt; Thomas Cremer; Roel van Driel; Christian Lanctôt
Journal:  J Cell Biochem       Date:  2007-12-01       Impact factor: 4.429

6.  Polycomb group gene silencing proteins are concentrated in the perichromatin compartment of the mammalian nucleus.

Authors:  Dusan Cmarko; Pernette J Verschure; Arie P Otte; Roel van Driel; Stanislav Fakan
Journal:  J Cell Sci       Date:  2003-01-15       Impact factor: 5.285

7.  Micromanipulation of chromosomes in mitotic vertebrate tissue cells: tension controls the state of kinetochore movement.

Authors:  R V Skibbens; E D Salmon
Journal:  Exp Cell Res       Date:  1997-09-15       Impact factor: 3.905

8.  Dictyostelium cells' cytoplasm as an active viscoplastic body.

Authors:  W Feneberg; M Westphal; E Sackmann
Journal:  Eur Biophys J       Date:  2001-08       Impact factor: 1.733

9.  Monitoring cell survival after extraction of a single subcellular organelle using optical trapping and pulsed-nitrogen laser ablation.

Authors:  J Patrick Shelby; J Scott Edgar; Daniel T Chiu
Journal:  Photochem Photobiol       Date:  2005 Jul-Aug       Impact factor: 3.421

10.  Time scale dependent viscoelastic and contractile regimes in fibroblasts probed by microplate manipulation.

Authors:  O Thoumine; A Ott
Journal:  J Cell Sci       Date:  1997-09       Impact factor: 5.285

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  9 in total

1.  Dynamics of magnetic particles in cylindrical Halbach array: implications for magnetic cell separation and drug targeting.

Authors:  Peter Babinec; Andrej Krafcík; Melánia Babincová; Joseph Rosenecker
Journal:  Med Biol Eng Comput       Date:  2010-06-02       Impact factor: 2.602

2.  Nucleoskeleton mechanics at a glance.

Authors:  Kris Noel Dahl; Agnieszka Kalinowski
Journal:  J Cell Sci       Date:  2011-03-01       Impact factor: 5.285

3.  Frequency Mixing Magnetic Detection Scanner for Imaging Magnetic Particles in Planar Samples.

Authors:  Hyobong Hong; Eul-Gyoon Lim; Jae-Chan Jeong; Jiho Chang; Sung-Woong Shin; Hans-Joachim Krause
Journal:  J Vis Exp       Date:  2016-06-09       Impact factor: 1.355

4.  Design and Modeling of a 3-D Magnetic Actuator for Magnetic Microbead Manipulation.

Authors:  Zhipeng Zhang; Chia-Hsiang Menq
Journal:  IEEE ASME Trans Mechatron       Date:  2011-06-01       Impact factor: 5.303

5.  Planar Steering of a Single Ferrofluid Drop by Optimal Minimum Power Dynamic Feedback Control of Four Electromagnets at a Distance.

Authors:  R Probst; J Lin; A Komaee; A Nacev; Z Cummins; B Shapiro
Journal:  J Magn Magn Mater       Date:  2011-04-01       Impact factor: 2.993

Review 6.  A Critical Review on the Sensing, Control, and Manipulation of Single Molecules on Optofluidic Devices.

Authors:  Mahmudur Rahman; Kazi Rafiqul Islam; Md Rashedul Islam; Md Jahirul Islam; Md Rejvi Kaysir; Masuma Akter; Md Arifur Rahman; S M Mahfuz Alam
Journal:  Micromachines (Basel)       Date:  2022-06-18       Impact factor: 3.523

Review 7.  Chromatin fiber dynamics under tension and torsion.

Authors:  Christophe Lavelle; Jean-Marc Victor; Jordanka Zlatanova
Journal:  Int J Mol Sci       Date:  2010-04-12       Impact factor: 5.923

Review 8.  Advances in Chromatin and Chromosome Research: Perspectives from Multiple Fields.

Authors:  Andrews Akwasi Agbleke; Assaf Amitai; Jason D Buenrostro; Aditi Chakrabarti; Lingluo Chu; Anders S Hansen; Kristen M Koenig; Ajay S Labade; Sirui Liu; Tadasu Nozaki; Sergey Ovchinnikov; Andrew Seeber; Haitham A Shaban; Jan-Hendrik Spille; Andrew D Stephens; Jun-Han Su; Dushan Wadduwage
Journal:  Mol Cell       Date:  2020-08-07       Impact factor: 17.970

9.  Magnetic tweezers for the measurement of twist and torque.

Authors:  Jan Lipfert; Mina Lee; Orkide Ordu; Jacob W J Kerssemakers; Nynke H Dekker
Journal:  J Vis Exp       Date:  2014-05-19       Impact factor: 1.355

  9 in total

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