Literature DB >> 18454937

Functional analysis of dicer-2 missense mutations in the siRNA pathway of Drosophila.

Do Hwan Lim1, Jung Kim, Sanguk Kim, Richard W Carthew, Young Sik Lee.   

Abstract

The Drosophila RNase III enzyme Dicer-2 processes double-stranded RNA (dsRNA) precursors into small interfering RNAs (siRNAs). It also interacts with the siRNA product and R2D2 protein to facilitate the assembly of an RNA-induced silencing complex (RISC) that mediates RNA interference. Here, we characterized six independent missense mutations in the dicer-2 gene. Four mutations (P8S, L188F, R269W, and P365L) in the DExH helicase domain reduced dsRNA processing activity. Two mutations were located within an RNase III domain. P1496L caused a loss of dsRNA processing activity comparable to a null dicer-2 mutation. A1453T strongly reduced both dsRNA processing and RISC activity, and decreased the levels of Dicer-2 and R2D2 proteins, suggesting that this mutation destabilizes Dicer-2. We also found that the carboxyl-terminal region of R2D2 is essential for Dicer-2 binding. These results provide further insight into the structure-function relationship of Dicer, which plays a critical role in the siRNA pathway.

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Year:  2008        PMID: 18454937      PMCID: PMC2924196          DOI: 10.1016/j.bbrc.2008.04.118

Source DB:  PubMed          Journal:  Biochem Biophys Res Commun        ISSN: 0006-291X            Impact factor:   3.575


  16 in total

1.  Targeted mRNA degradation by double-stranded RNA in vitro.

Authors:  T Tuschl; P D Zamore; R Lehmann; D P Bartel; P A Sharp
Journal:  Genes Dev       Date:  1999-12-15       Impact factor: 11.361

2.  Single processing center models for human Dicer and bacterial RNase III.

Authors:  Haidi Zhang; Fabrice A Kolb; Lukasz Jaskiewicz; Eric Westhof; Witold Filipowicz
Journal:  Cell       Date:  2004-07-09       Impact factor: 41.582

Review 3.  Assembly and function of RNA silencing complexes.

Authors:  Erik J Sontheimer
Journal:  Nat Rev Mol Cell Biol       Date:  2005-02       Impact factor: 94.444

4.  Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans.

Authors:  A Fire; S Xu; M K Montgomery; S A Kostas; S E Driver; C C Mello
Journal:  Nature       Date:  1998-02-19       Impact factor: 49.962

5.  Crystallographic and modeling studies of RNase III suggest a mechanism for double-stranded RNA cleavage.

Authors:  J Blaszczyk; J E Tropea; M Bubunenko; K M Routzahn; D S Waugh; D L Court; X Ji
Journal:  Structure       Date:  2001-12       Impact factor: 5.006

6.  A genetic method for generating Drosophila eyes composed exclusively of mitotic clones of a single genotype.

Authors:  R S Stowers; T L Schwarz
Journal:  Genetics       Date:  1999-08       Impact factor: 4.562

7.  Dicer-1 and R3D1-L catalyze microRNA maturation in Drosophila.

Authors:  Feng Jiang; Xuecheng Ye; Xiang Liu; Lauren Fincher; Dennis McKearin; Qinghua Liu
Journal:  Genes Dev       Date:  2005-06-28       Impact factor: 11.361

8.  R2D2, a bridge between the initiation and effector steps of the Drosophila RNAi pathway.

Authors:  Qinghua Liu; Tim A Rand; Savitha Kalidas; Fenghe Du; Hyun-Eui Kim; Dean P Smith; Xiaodong Wang
Journal:  Science       Date:  2003-09-26       Impact factor: 47.728

9.  A Dicer-2-dependent 80s complex cleaves targeted mRNAs during RNAi in Drosophila.

Authors:  John W Pham; Janice L Pellino; Young Sik Lee; Richard W Carthew; Erik J Sontheimer
Journal:  Cell       Date:  2004-04-02       Impact factor: 41.582

10.  Distinct roles for Drosophila Dicer-1 and Dicer-2 in the siRNA/miRNA silencing pathways.

Authors:  Young Sik Lee; Kenji Nakahara; John W Pham; Kevin Kim; Zhengying He; Erik J Sontheimer; Richard W Carthew
Journal:  Cell       Date:  2004-04-02       Impact factor: 41.582

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  15 in total

1.  A key gene of the small RNA pathway in the flounder, Paralichthys olivaceus: identification and functional characterization of dicer.

Authors:  Yuanshuai Fu; Junling Zhang; Zhiyi Shi; Guyue Wang; Wejuan Li; Liang Jia
Journal:  Fish Physiol Biochem       Date:  2015-06-05       Impact factor: 2.794

2.  A Drosophila genetic screen yields allelic series of core microRNA biogenesis factors and reveals post-developmental roles for microRNAs.

Authors:  Peter Smibert; Fernando Bejarano; Dong Wang; Daniel L Garaulet; Jr-Shiuan Yang; Raquel Martin; Diane Bortolamiol-Becet; Nicolas Robine; P Robin Hiesinger; Eric C Lai
Journal:  RNA       Date:  2011-09-23       Impact factor: 4.942

Review 3.  'Black sheep' that don't leave the double-stranded RNA-binding domain fold.

Authors:  Michael L Gleghorn; Lynne E Maquat
Journal:  Trends Biochem Sci       Date:  2014-06-19       Impact factor: 13.807

4.  Targeting of dicer-2 and RNA by a viral RNA silencing suppressor in Drosophila cells.

Authors:  Nan Qi; Lei Zhang; Yang Qiu; Zhaowei Wang; Jie Si; Yongxiang Liu; Xue Xiang; Jiazheng Xie; Cheng-Feng Qin; Xi Zhou; Yuanyang Hu
Journal:  J Virol       Date:  2012-03-21       Impact factor: 5.103

5.  Effects of polymorphisms in the 3' untranslated region of the porcine PPARGC1A gene on muscle fiber characteristics and meat quality traits.

Authors:  Jun-Seong Lee; Jun-Mo Kim; Jae-Sang Hong; Kyu-Sang Lim; Ki-Chang Hong; Young Sik Lee
Journal:  Mol Biol Rep       Date:  2011-07-12       Impact factor: 2.316

6.  Comparison of dengue virus type 2-specific small RNAs from RNA interference-competent and -incompetent mosquito cells.

Authors:  Jaclyn C Scott; Doug E Brackney; Corey L Campbell; Virginie Bondu-Hawkins; Brian Hjelle; Greg D Ebel; Ken E Olson; Carol D Blair
Journal:  PLoS Negl Trop Dis       Date:  2010-10-26

Review 7.  Antiviral immunity in drosophila.

Authors:  Cordula Kemp; Jean-Luc Imler
Journal:  Curr Opin Immunol       Date:  2009-02-14       Impact factor: 7.486

8.  Coordinated activities of human dicer domains in regulatory RNA processing.

Authors:  Enbo Ma; Kaihong Zhou; Mary Anne Kidwell; Jennifer A Doudna
Journal:  J Mol Biol       Date:  2012-06-19       Impact factor: 5.469

9.  Rapid intraspecific evolution of miRNA and siRNA genes in the mosquito Aedes aegypti.

Authors:  Scott A Bernhardt; Mark P Simmons; Ken E Olson; Barry J Beaty; Carol D Blair; William C Black
Journal:  PLoS One       Date:  2012-09-21       Impact factor: 3.240

10.  Loqs-PD and R2D2 define independent pathways for RISC generation in Drosophila.

Authors:  Julia V Hartig; Klaus Förstemann
Journal:  Nucleic Acids Res       Date:  2011-01-17       Impact factor: 16.971

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