Literature DB >> 18449576

Loss of enzyme activity during turnover of the Bacillus cereus beta-lactamase catalysed hydrolysis of beta-lactams due to loss of zinc ion.

Adriana Badarau1, Michael I Page.   

Abstract

Metallo-beta-lactamases are zinc-ion-dependent and are known to exist either as mononuclear or as dinuclear enzymes. The kinetics and mechanism of hydrolysis of the native zinc Bacillus cereus metallo-beta-lactamase (BcII) have been investigated under pre-steady-state conditions at different pHs and zinc-ion concentrations. Biphasic kinetics are observed for the hydrolysis of cefuroxime and benzylpenicillin with submicromolar concentrations of enzyme and zinc. The initial burst of product formation far exceeds the concentration of enzyme and the subsequent slower rate of hydrolysis is attributed to a branched kinetic pathway. The pH and metal-ion dependence of the microscopic rate constants of this branching were determined, from which it is concluded that two enzyme species with different metal-to-enzyme stoichiometries are formed during catalytic turnover. The dizinc enzyme is responsible for the fast route but during the catalytic cycle it slowly loses the less tightly bound zinc ion via the branching route to give an inactive monozinc enzyme; the latter is only catalytic following the uptake of a second zinc ion. The rate constant for product formation from the dinuclear enzyme and the branching rate constant show a sigmoidal dependence on pH indicative of important ionizing groups with pK(a)s of 9.0+/-0.1 and 8.2+/-0.1, respectively. The rate constant for the regeneration of enzyme activity depends on zinc-ion concentration. This unusual behaviour is attributed to an intrinsic property of metallo hydrolytic enzymes that depend on a metal bound water both as a ligand for the second metal ion and as the nucleophile which is consumed during hydrolysis of the substrate and so has to be replaced to maintain the catalytic cycle.

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Year:  2008        PMID: 18449576     DOI: 10.1007/s00775-008-0379-2

Source DB:  PubMed          Journal:  J Biol Inorg Chem        ISSN: 0949-8257            Impact factor:   3.358


  28 in total

1.  Standard numbering scheme for class B beta-lactamases.

Authors:  M Galleni; J Lamotte-Brasseur; G M Rossolini; J Spencer; O Dideberg; J M Frère
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2.  Mono- and binuclear Zn2+-beta-lactamase. Role of the conserved cysteine in the catalytic mechanism.

Authors:  R Paul-Soto; R Bauer; J M Frère; M Galleni; W Meyer-Klaucke; H Nolting; G M Rossolini; D de Seny; M Hernandez-Valladares; M Zeppezauer; H W Adolph
Journal:  J Biol Chem       Date:  1999-05-07       Impact factor: 5.157

3.  Exploring the role and the binding affinity of a second zinc equivalent in B. cereus metallo-beta-lactamase.

Authors:  Rodolfo M Rasia; Alejandro J Vila
Journal:  Biochemistry       Date:  2002-02-12       Impact factor: 3.162

4.  Cryoenzymology of Bacillus cereus beta-lactamase II.

Authors:  R Bicknell; S G Waley
Journal:  Biochemistry       Date:  1985-11-19       Impact factor: 3.162

5.  Effect of pH on the active site of an Arg121Cys mutant of the metallo-beta-lactamase from Bacillus cereus: implications for the enzyme mechanism.

Authors:  Anna M Davies; Rodolfo M Rasia; Alejandro J Vila; Brian J Sutton; Stella M Fabiane
Journal:  Biochemistry       Date:  2005-03-29       Impact factor: 3.162

6.  Crystal structures of the cadmium- and mercury-substituted metallo-beta-lactamase from Bacteroides fragilis.

Authors:  N O Concha; B A Rasmussen; K Bush; O Herzberg
Journal:  Protein Sci       Date:  1997-12       Impact factor: 6.725

7.  On the competition for available zinc.

Authors:  Uwe Heinz; Martin Kiefer; Andreas Tholey; Hans-Werner Adolph
Journal:  J Biol Chem       Date:  2004-11-08       Impact factor: 5.157

8.  Characterization of the metal-binding sites of the beta-lactamase from Bacteroides fragilis.

Authors:  M W Crowder; Z Wang; S L Franklin; E P Zovinka; S J Benkovic
Journal:  Biochemistry       Date:  1996-09-17       Impact factor: 3.162

9.  Spectroscopic characterization of a binuclear metal site in Bacillus cereus beta-lactamase II.

Authors:  E G Orellano; J E Girardini; J A Cricco; E A Ceccarelli; A J Vila
Journal:  Biochemistry       Date:  1998-07-14       Impact factor: 3.162

10.  The 3-D structure of a zinc metallo-beta-lactamase from Bacillus cereus reveals a new type of protein fold.

Authors:  A Carfi; S Pares; E Duée; M Galleni; C Duez; J M Frère; O Dideberg
Journal:  EMBO J       Date:  1995-10-16       Impact factor: 11.598

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  10 in total

1.  Zinc ion-induced domain organization in metallo-beta-lactamases: a flexible "zinc arm" for rapid metal ion transfer?

Authors:  Nathalie Selevsek; Sandrine Rival; Andreas Tholey; Elmar Heinzle; Uwe Heinz; Lars Hemmingsen; Hans W Adolph
Journal:  J Biol Chem       Date:  2009-04-24       Impact factor: 5.157

2.  X-ray absorption spectroscopy of metal site speciation in the metallo-β-lactamase BcII from Bacillus cereus.

Authors:  Robert M Breece; Leticia I Llarrull; Mariana F Tioni; Alejandro J Vila; David L Tierney
Journal:  J Inorg Biochem       Date:  2012-01-31       Impact factor: 4.155

Review 3.  Overcoming differences: The catalytic mechanism of metallo-β-lactamases.

Authors:  María-Rocío Meini; Leticia I Llarrull; Alejandro J Vila
Journal:  FEBS Lett       Date:  2015-08-20       Impact factor: 4.124

4.  Suppression of β-Lactam Resistance by Aspergillomarasmine A Is Influenced by both the Metallo-β-Lactamase Target and the Antibiotic Partner.

Authors:  Caitlyn M Rotondo; David Sychantha; Kalinka Koteva; Gerard D Wright
Journal:  Antimicrob Agents Chemother       Date:  2020-03-24       Impact factor: 5.191

5.  Effect of mutation on the stabilization energy of HIV-1 zinc fingers: a hybrid local self-consistent field/molecular mechanics investigation.

Authors:  Nedjoua Drici; Mohamed Abdelghani Krallafa
Journal:  J Biol Inorg Chem       Date:  2016-11-15       Impact factor: 3.358

Review 6.  Metallo-β-lactamase structure and function.

Authors:  Timothy Palzkill
Journal:  Ann N Y Acad Sci       Date:  2012-11-16       Impact factor: 5.691

7.  Common mechanistic features among metallo-beta-lactamases: a computational study of Aeromonas hydrophila CphA enzyme.

Authors:  Fabio Simona; Alessandra Magistrato; Matteo Dal Peraro; Andrea Cavalli; Alejandro J Vila; Paolo Carloni
Journal:  J Biol Chem       Date:  2009-08-11       Impact factor: 5.157

8.  Differential binding of Co(II) and Zn(II) to metallo-beta-lactamase Bla2 from Bacillus anthracis.

Authors:  Megan J Hawk; Robert M Breece; Christine E Hajdin; Katherine M Bender; Zhenxin Hu; Alison L Costello; Brian Bennett; David L Tierney; Michael W Crowder
Journal:  J Am Chem Soc       Date:  2009-08-05       Impact factor: 15.419

9.  Crystal Structure of DIM-1, an Acquired Subclass B1 Metallo-β-Lactamase from Pseudomonas stutzeri.

Authors:  Michael P S Booth; Magda Kosmopoulou; Laurent Poirel; Patrice Nordmann; James Spencer
Journal:  PLoS One       Date:  2015-10-09       Impact factor: 3.240

10.  Biochemical and genetic characterization of a novel metallo-β-lactamase from marine bacterium Erythrobacter litoralis HTCC 2594.

Authors:  Xia-Wei Jiang; Hong Cheng; Ying-Yi Huo; Lin Xu; Yue-Hong Wu; Wen-Hong Liu; Fang-Fang Tao; Xin-Jie Cui; Bei-Wen Zheng
Journal:  Sci Rep       Date:  2018-01-16       Impact factor: 4.379

  10 in total

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