Literature DB >> 18448683

Noncanonical role of Hox14 revealed by its expression patterns in lamprey and shark.

Shigehiro Kuraku1, Yoko Takio, Koji Tamura, Hideaki Aono, Axel Meyer, Shigeru Kuratani.   

Abstract

Hox genes are arranged in uninterrupted clusters in vertebrate genomes, and the nested patterns of their expression define spatial identities in multiple embryonic tissues. The ancestral Hox cluster of vertebrates has long been thought to consist of, maximally, 13 Hox genes. However, recently, Hox14 genes were discovered in three chordate lineages, the coelacanth, cartilaginous fishes, and amphioxus, but their expression patterns have not yet been analyzed. We isolated Hox14 cDNAs from the Japanese lamprey and cloudy catshark. These genes were not expressed in the central nervous systems, somites, or fin buds/folds but were expressed in a restricted cell population surrounding the hindgut. The lack of Hox14 expression in most of the embryonic axial elements, where nested Hox expressions define spatial identities, suggests a decoupling of Hox14 genes' regulation from the ancestral regulatory mechanism. The relaxation of preexisting constraint for collinear expression may have permitted the secondary losses of this Hox member in the tetrapod and teleost lineages.

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Year:  2008        PMID: 18448683      PMCID: PMC2373320          DOI: 10.1073/pnas.0710947105

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  37 in total

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5.  MrBayes 3: Bayesian phylogenetic inference under mixed models.

Authors:  Fredrik Ronquist; John P Huelsenbeck
Journal:  Bioinformatics       Date:  2003-08-12       Impact factor: 6.937

6.  Evidence for a Hox14 paralog group in vertebrates.

Authors:  Thomas P Powers; Chris T Amemiya
Journal:  Curr Biol       Date:  2004-03-09       Impact factor: 10.834

7.  The amphioxus Hox cluster: deuterostome posterior flexibility and Hox14.

Authors:  D E Ferrier; C Minguillón; P W Holland; J Garcia-Fernàndez
Journal:  Evol Dev       Date:  2000 Sep-Oct       Impact factor: 1.930

8.  Genomic analysis of Hox clusters in the sea lamprey Petromyzon marinus.

Authors:  Steven Q Irvine; Janet L Carr; Wendy J Bailey; Kazuhiko Kawasaki; Nobuyoshi Shimizu; Chris T Amemiya; Frank H Ruddle
Journal:  J Exp Zool       Date:  2002-04-15

9.  Comprehensive survey of carapacial ridge-specific genes in turtle implies co-option of some regulatory genes in carapace evolution.

Authors:  Shigehiro Kuraku; Ryo Usuda; Shigeru Kuratani
Journal:  Evol Dev       Date:  2005 Jan-Feb       Impact factor: 1.930

10.  MAFFT version 5: improvement in accuracy of multiple sequence alignment.

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Journal:  Nucleic Acids Res       Date:  2005-01-20       Impact factor: 16.971

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  20 in total

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Authors:  Makoto Urata; Jun Tsuchimoto; Kinya Yasui; Masaaki Yamaguchi
Journal:  Dev Genes Evol       Date:  2009-08-06       Impact factor: 0.900

2.  A non-tree-based comprehensive study of metazoan Hox and ParaHox genes prompts new insights into their origin and evolution.

Authors:  Morgane Thomas-Chollier; Valérie Ledent; Luc Leyns; Michel Vervoort
Journal:  BMC Evol Biol       Date:  2010-03-11       Impact factor: 3.260

3.  Complete HOX cluster characterization of the coelacanth provides further evidence for slow evolution of its genome.

Authors:  Chris T Amemiya; Thomas P Powers; Sonja J Prohaska; Jane Grimwood; Jeremy Schmutz; Mark Dickson; Tsutomu Miyake; Michael A Schoenborn; Richard M Myers; Francis H Ruddle; Peter F Stadler
Journal:  Proc Natl Acad Sci U S A       Date:  2010-02-05       Impact factor: 11.205

4.  Evidence for at least six Hox clusters in the Japanese lamprey (Lethenteron japonicum).

Authors:  Tarang K Mehta; Vydianathan Ravi; Shinichi Yamasaki; Alison P Lee; Michelle M Lian; Boon-Hui Tay; Sumanty Tohari; Seiji Yanai; Alice Tay; Sydney Brenner; Byrappa Venkatesh
Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-16       Impact factor: 11.205

5.  Ancient homeobox gene loss and the evolution of chordate brain and pharynx development: deductions from amphioxus gene expression.

Authors:  Thomas Butts; Peter W H Holland; David E K Ferrier
Journal:  Proc Biol Sci       Date:  2010-06-16       Impact factor: 5.349

6.  Elephant shark (Callorhinchus milii) provides insights into the evolution of Hox gene clusters in gnathostomes.

Authors:  Vydianathan Ravi; Kevin Lam; Boon-Hui Tay; Alice Tay; Sydney Brenner; Byrappa Venkatesh
Journal:  Proc Natl Acad Sci U S A       Date:  2009-09-03       Impact factor: 11.205

7.  The origin of bmp16, a novel Bmp2/4 relative, retained in teleost fish genomes.

Authors:  Nathalie Feiner; Gerrit Begemann; Adina J Renz; Axel Meyer; Shigehiro Kuraku
Journal:  BMC Evol Biol       Date:  2009-12-01       Impact factor: 3.260

8.  Broken colinearity of the amphioxus Hox cluster.

Authors:  Juan Pascual-Anaya; Noritaka Adachi; Susana Alvarez; Shigeru Kuratani; Salvatore D'Aniello; Jordi Garcia-Fernàndez
Journal:  Evodevo       Date:  2012-12-03       Impact factor: 2.250

9.  An independent genome duplication inferred from Hox paralogs in the American paddlefish--a representative basal ray-finned fish and important comparative reference.

Authors:  Karen D Crow; Christopher D Smith; Jan-Fang Cheng; Günter P Wagner; Chris T Amemiya
Journal:  Genome Biol Evol       Date:  2012-07-31       Impact factor: 3.416

10.  aLeaves facilitates on-demand exploration of metazoan gene family trees on MAFFT sequence alignment server with enhanced interactivity.

Authors:  Shigehiro Kuraku; Christian M Zmasek; Osamu Nishimura; Kazutaka Katoh
Journal:  Nucleic Acids Res       Date:  2013-05-15       Impact factor: 16.971

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