| Literature DB >> 18439243 |
Angelika Kippert1, Katarina Trajkovic, Dirk Fitzner, Lennart Opitz, Mikael Simons.
Abstract
BACKGROUND: During the development of the central nervous system, oligodendrocytes generate large amounts of myelin, a multilayered insulating membrane that ensheathes axons, thereby allowing the fast conduction of the action potential and maintaining axonal integrity. Differentiation of oligodendrocytes to myelin-forming cells requires the downregulation of RhoA GTPase activity.Entities:
Mesh:
Substances:
Year: 2008 PMID: 18439243 PMCID: PMC2396630 DOI: 10.1186/1471-2202-9-40
Source DB: PubMed Journal: BMC Neurosci ISSN: 1471-2202 Impact factor: 3.288
Top 80 upregulated genes after addition of conditioned neuronal medium to Oli-neu cells
| Probe set ID | Fold change | p-value | Gene name | Gene symbol |
| A_52_P624415 | 7.12 | 0.00015 | transmembrane protein 10 | Tmem10 |
| A_51_P225761 | 6.96 | 0.00020 | ESTs, no homologies found | |
| A_52_P225856 | 6.76 | 0.00013 | ESTs, no homologies found | |
| A_52_P329250 | 6.51 | 0.00000 | chromodomain helicase DNA binding protein 1 | Chd1 |
| A_51_P304109 | 6.41 | 0.00007 | cytochrome P450, family 2, subfamily c, polypeptide 39 | Cyp2c39 |
| A_52_P160518 | 6.23 | 0.00005 | Scm-like with four mbt domains 1 | Sfmbt1 |
| A_52_P771513 | 6.22 | 0.00027 | ESTs, no homologies found | |
| A_52_P61864 | 6.14 | 0.00023 | wingless-related MMTV integration site 2 | Wnt2 |
| A_51_P370640 | 6.05 | 0.00013 | zinc finger, CCHC domain containing 5 | Zcchc5 |
| A_51_P186092 | 6 | 0.00017 | male sterility domain containing 2 | Mlstd2 |
| A_52_P24076 | 5.95 | 0.00026 | myotubularin related protein 7 | Mtmr7 |
| A_52_P448870 | 5.9 | 0.00025 | RAB26, member RAS oncogene family | Rab26 |
| A_52_P193256 | 5.81 | 0.00032 | DNA segment, Chr 10, Brigham & Women's Genetics 0791 | D10Bwg0791e |
| A_52_P350750 | 5.81 | 0.00017 | cholinergic receptor, nicotinic, alpha polypeptide 4 | Chrna4 |
| A_52_P391098 | 5.74 | 0.00022 | cAMP responsive element modulator | Crem |
| A_51_P127035 | 5.72 | 0.00082 | RIKEN cDNA 4432405B04 gene | 4432405B04Rik |
| A_52_P600304 | 5.69 | 0.00013 | RIKEN cDNA 1200007B05 gene | 1200007B05Rik |
| A_51_P448632 | 5.68 | 0.00033 | RIKEN cDNA C030022K24 gene | C030022K24Rik |
| A_52_P188593 | 5.68 | 0.00017 | hypothetical gene supported by AK049058; BC025881 | LOC433886 |
| A_51_P359002 | 5.59 | 0.00028 | ESTs, no homologies found | |
| A_52_P302587 | 5.55 | 0.00021 | chimerin (chimaerin) 2 | Chn2 |
| A_51_P444502 | 5.44 | 0.00029 | immunoglobulin kappa light chain variable region Vk23 | LOC381783 |
| A_51_P461404 | 5.42 | 0.00014 | SWI/SNF related, actin dependent regulator of chromatin | Smarca1 |
| A_52_P577329 | 5.37 | 0.00021 | RIKEN cDNA A230069A22 gene | A230069A22Rik |
| A_51_P334449 | 5.37 | 0.00033 | olfactory receptor 50 | Olfr50 |
| A_52_P354306 | 5.32 | 0.00013 | peroxisome biogenesis factor 26 | Pex26 |
| A_51_P462978 | 5.31 | 0.00033 | membrane protein, palmitoylated 2 | Mpp2 |
| A_52_P661972 | 5.3 | 0.00021 | RIKEN cDNA 9230112E08 gene | 9230112E08Rik |
| A_52_P1133703 | 5.29 | 0.00014 | CD47 antigen (Rh-related antigen) | Cd47 |
| A_51_P169617 | 5.28 | 0.00041 | TAF3 RNA polymerase II, TATA box binding protein | Taf3 |
| A_51_P339934 | 5.24 | 0.00022 | neurofilament, light polypeptide | Nefl |
| A_51_P472113 | 5.23 | 0.00060 | ESTs, no homologies found | |
| A_51_P262563 | 5.22 | 0.00031 | ESTs, no homologies found | |
| A_51_P284486 | 5.2 | 0.00030 | glutathione S-transferase, mu 2 | Gstm2 |
| A_51_P103706 | 5.17 | 0.00054 | cytochrome P450, family 2, subfamily c, polypeptide 29 | Cyp2c29 |
| A_52_P223626 | 5.17 | 0.00011 | oligodendrocyte transcription factor 2 | Olig2 |
| A_51_P392209 | 5.17 | 0.00019 | zinc finger protein 482 | Zfp482 |
| A_51_P283499 | 5.17 | 0.00022 | dopamine receptor 4 | Drd4 |
| A_52_P229052 | 5.17 | 0.00019 | transmembrane prot. with EGF-like and two follistatin-like | Tmeff2 |
| A_52_P337910 | 5.15 | 0.00015 | RIKEN cDNA E130114P18 gene | E130114P18Rik |
| A_51_P129108 | 5.11 | 0.00019 | activating transcription factor 6 | Atf6 |
| A_51_P393934 | 5.11 | 0.00028 | CD82 antigen | Cd82 |
| A_51_P413005 | 5.08 | 0.00021 | chimerin (chimaerin) 2 | Chn2 |
| A_51_P394574 | 5.05 | 0.00019 | ESTs, no homologies found | |
| A_51_P478003 | 5.04 | 0.00046 | poly(A) polymerase gamma | Papolg |
| A_52_P516733 | 5.02 | 0.00086 | DNA segment, Chr 15, ERATO Doi 621, expressed | D15Ertd621e |
| A_52_P127776 | 5.01 | 0.00030 | ESTs, no homologies found | |
| A_52_P384479 | 4.95 | 0.00014 | leucine rich repeat and fibronectin type III domain | Lrfn5 |
| A_52_P118323 | 4.93 | 0.00042 | ESTs, no homologies found | |
| A_52_P685963 | 4.91 | 0.00041 | tenascin R | Tnr |
| A_52_P313068 | 4.83 | 0.00016 | RIKEN cDNA 8030462N17 gene | 8030462N17Rik |
| A_51_P489107 | 4.83 | 0.00013 | pleckstrin homology domain-containing, family A, memb. 2 | Plekha2 |
| A_51_P454008 | 4.82 | 0.00027 | lipopolysaccharide binding protein | Lbp |
| A_52_P418956 | 4.81 | 0.00059 | RIKEN cDNA 4933431E20 gene | 4933431E20Rik |
| A_51_P244453 | 4.8 | 0.00059 | potassium channel tetramerisation domain containing 3 | Kctd3 |
| A_51_P342206 | 4.79 | 0.00890 | cytochrome P450, family 2, subfamily c, polypeptide 38 | Cyp2c38 |
| A_51_P270899 | 4.78 | 0.00019 | zinc finger protein 61 | Zfp61 |
| A_52_P370162 | 4.78 | 0.00034 | G protein-coupled receptor 23 | Gpr23 |
| A_52_P356170 | 4.77 | 0.00024 | glyceraldehyde-3-phosphate dehydrogenase, spermatogenic | Gapdhs |
| A_51_P130254 | 4.75 | 0.00021 | pleckstrin and Sec7 domain containing 3 | Psd3 |
| A_51_P363461 | 4.73 | 0.00022 | ESTs, no homologies found | |
| A_52_P502838 | 4.72 | 0.00033 | mannoside acetylglucosaminyltransferase 5 | Mgat5 |
| A_51_P494122 | 4.69 | 0.00050 | RIKEN cDNA 1810009K13 gene | 1810009K13Rik |
| A_52_P285194 | 4.69 | 0.00021 | ESTs, no homologies found | |
| A_51_P169087 | 4.67 | 0.00035 | ESTs, no homologies found | |
| A_51_P506822 | 4.65 | 0.00015 | UDP galactosyltransferase 8A | Ugt8a |
| A_52_P164709 | 4.64 | 0.00030 | WD repeat domain 51A | Wdr51a |
| A_51_P226269 | 4.62 | 0.00022 | RIKEN cDNA 1190002H23 gene | 1190002H23Rik |
| r60_a9 | 4.55 | 0.00003 | fibronectin 1 | Fn1 |
| A_51_P111233 | 4.49 | 0.00013 | dopamine receptor 2 | Drd2 |
| A_52_P265556 | 4.49 | 0.00042 | predicted gene, ENSMUSG00000056850 | ENSMUSG00000056850 |
| A_52_P417654 | 4.47 | 0.00022 | transcription elongation factor A (SII) 1 | Tcea1 |
| A_52_P625249 | 4.44 | 0.00021 | cytochrome P450, family 2. subfamily c, polypeptide 37 | Cyp2c37 |
| A_52_P603038 | 4.44 | 0.00021 | oligodendrocyte transcription factor 1 | Olig1 |
| A_51_P199199 | 4.42 | 0.00024 | phosphoinositide-3-kinase adaptor protein 1 | Pik3ap1 |
| A_52_P510706 | 4.41 | 0.00030 | DnaJ (Hsp40) homolog, subfamily A, member 2 | Dnaja2 |
| A_52_P57416 | 4.39 | 0.00044 | ESTs, no homologies found | |
| A_52_P322639 | 4.38 | 0.00031 | ESTs, no homologies found | |
| A_51_P232901 | 4.37 | 0.00007 | cyclic nucleotide phosphodiesterase 1 | Cnp1 |
Genes regulated in the same direction after treatment with conditioned neuronal medium (cnm) or Y27632
| Probe set ID | Fold change | p-val | Fold change | p-val | Gene name | Gene symbol |
| A_52_P624415 | 7,12 | 0,00015 | 2,2 | 0,00054 | transmembrane protein 10 | Tmem10 |
| A_51_P304109 | 6,41 | 0,00007 | 2,96 | 0,00127 | cytochrome P450, family 2, subfamily c, polypept. 39 | Cyp2c39 |
| A_52_P302587 | 5,55 | 0,00021 | 1,48 | 0,00111 | chimerin (chimaerin) 2 | Chn2 |
| A_52_P229052 | 5,17 | 0,00019 | 2,05 | 0,00067 | transmembr. prot. with EGF-like, dom. 2 | Tmeff2 |
| A_51_P103706 | 5,17 | 0,00054 | 1,29 | 0,00429 | cytochrome P450, family 2, subfamily c, polypept. 29 | Cyp2c29 |
| A_51_P413005 | 5,08 | 0,00021 | 1,43 | 0,00086 | chimerin (chimaerin) 2 | Chn2 |
| A_51_P454008 | 4,82 | 0,00027 | 1,37 | 0,00043 | lipopolysaccharide binding protein | Lbp |
| A_51_P506822 | 4,65 | 0,00015 | 1,25 | 0,00296 | UDP galactosyltransferase 8A | Ugt8a |
| A_51_P232901 | 4,37 | 0,00007 | 1,47 | 0,00096 | cyclic nucleotide phosphodiesterase 1 | Cnp1 |
| A_52_P661327 | 4,31 | 0,00018 | 1,3 | 0,00029 | phytanoyl-CoA hydroxylase interacting protein-like | Phyhipl |
| A_51_P433194 | 3,43 | 0,00024 | 1,46 | 0,00218 | breast carcinoma amplified sequence 1 | Bcas1 |
| A_51_P437079 | 3,07 | 0,00013 | 1,44 | 0,00068 | RIKEN cDNA 5730559C18 gene | 5730559C18Rik |
| A_52_P269003 | 2,53 | 0,00062 | 1,45 | 0,00147 | Neogenin | Neo1 |
| A_51_P259975 | 2,48 | 0,00007 | 1,54 | 0,00051 | aspartoacylase | Aspa |
| A_52_P493854 | 2,42 | 0,0002 | 2,18 | 0,00084 | potassium channel tetramerisation domain | Kctd4 |
| A_52_P493857 | 2,39 | 0,00023 | 2,31 | 0,00111 | potassium channel tetramerisation domain | Kctd4 |
| A_51_P354354 | 2,29 | 0,00032 | 2,12 | 0,00172 | galactose-3-O-sulfotransferase 1 | Gal3st1 |
| A_51_P112308 | 2,25 | 0,00014 | 1,26 | 0,00057 | RIKEN cDNA 1810011O10 gene | 1810011O10Rik |
| A_51_P413721 | 2,18 | 0,00025 | 1,88 | 0,00036 | gap junction membrane channel prot. epsilon 1 | Gje1 |
| A_51_P145376 | 2,12 | 0,00024 | 1,48 | 0,00033 | OTU domain containing 7B | Otud7b |
| A_52_P168953 | 2,07 | 0,00037 | 1,38 | 0,0073 | Versican | Vcan |
| A_52_P376169 | 2 | 0,00016 | 1,23 | 0,00125 | LY6/PLAUR domain containing 6 | Lypd6 |
| A_51_P196596 | 1,95 | 0,00022 | 2,42 | 0,00046 | tripartite motif protein 2 | Trim2 |
| A_51_P159453 | 1,94 | 0,00026 | 1,68 | 0,00202 | serine (or cystein) peptidase inhib. 3n | Serpina3n |
| A_52_P149801 | 1,92 | 0,00044 | 1,9 | 0,0007 | phosphodiesterase 4B, cAMP specific | Pde4b |
| A_52_P121502 | 1,87 | 0,00045 | 1,34 | 0,00159 | plasma membrane proteolipid | Pllp |
| A_52_P465012 | 1,76 | 0,00081 | 2,75 | 0,00029 | protein phosphatase 2, SU B (PR 52), beta isoform | Ppp2r2b |
| A_51_P512119 | 1,73 | 0,00067 | 1,31 | 0,00255 | cDNA sequence AF067063 | AF067063 |
| A_52_P213932 | -4,18 | 0,00021 | -1,85 | 0,00255 | metallopeptidase with thrombospondin type 1 | Adamts1 |
| A_51_P426754 | -4,17 | 0,00203 | -2,89 | 0,00059 | annexin A5 | Anxa5 |
| A_52_P520495 | -4,09 | 0,00022 | -3,34 | 0,0005 | vascular cell adhesion molecule 1 | Vcam1 |
| A_51_P115462 | -3,73 | 0,00027 | -2,57 | 0,00091 | spermatogen. associat. glut. (E)-rich prot. 6, ps 1 | Speer6-ps1 |
| A_52_P433119 | -3,55 | 0,00313 | -2,14 | 0,00092 | spermatogenesis associat. glut. (E)-rich prot. 2 | Speer2 |
| A_51_P183571 | -3,31 | 0,00022 | -1,64 | 0,0013 | serine (or cysteine) peptidase inhib. 1 | Serpine1 |
| A_52_P62037 | -3,18 | 0,00032 | -1,47 | 0,00052 | annexin A2 | Anxa2 |
| A_52_P63948 | -3,13 | 0,0002 | -2,44 | 0,00058 | cDNA sequence BC048651 | BC048651 |
| A_52_P148703 | -3,09 | 0,00013 | -1,66 | 0,00059 | fer-1-like 3, myoferlin (C. elegans) | Fer1l3 |
| A_51_P131408 | -2,99 | 0,00014 | -1,33 | 0,00168 | tumor necrosis factor receptor superfamily,12a | Tnfrsf12a |
| A_51_P282584 | -2,96 | 0,0002 | -1,39 | 0,00137 | Olfactomedin-like 2B | Olfml2b |
| A_51_P165342 | -2,87 | 0,00035 | -1,84 | 0,00135 | annexin A2 | Anxa2 |
| A_52_P518949 | -2,84 | 0,00044 | -2,3 | 0,00035 | similar to spermatogen. associat. glut. (E)-rich prot. 2 | LOC381612 |
| A_52_P771912 | -2,84 | 0,00019 | -2,18 | 0,00091 | lymphocyte antigen 6 complex, locus C | Ly6c |
| A_52_P360440 | -2,81 | 0,00063 | -1,39 | 0,00052 | fer-1-like 3, myoferlin (C. elegans) | Fer1l3 |
| A_51_P182116 | -2,79 | 0,00021 | -2,97 | 0,00033 | Down syndrome critical region homolog 1 (human) | Dscr1 |
| A_52_P628885 | -2,77 | 0,00027 | -2,25 | 0,00072 | brain and acute leukemia, cytoplasmic | Baalc |
| A_52_P385546 | -2,64 | 0,0002 | -1,32 | 0,00158 | C1q-like 3 | C1ql3 |
| A_52_P594584 | -2,59 | 0,00179 | -2,09 | 0,00208 | spermatogenesis associat. glut. (E)-rich protein 2 | Speer2 |
| A_51_P228472 | -2,48 | 0,00028 | -1,94 | 0,00069 | insulin-like growth factor binding protein 3 | Igfbp3 |
| A_52_P196732 | -2,43 | 0,00039 | -1,57 | 0,00151 | NIMA-related expressed kinase 6 | Nek6 |
| A_51_P181595 | -2,38 | 0,00024 | -1,77 | 0,00058 | spermatogen. associat. glut. (E)-rich prot. 1, ps 1 | Speer1-ps1 |
| A_51_P435023 | -2,37 | 0,00007 | -1,44 | 0,0003 | Ras association (RalGDS/AF-6) domain family 1 | Rassf1 |
| A_52_P661565 | -2,36 | 0,00034 | -3,42 | 0,00068 | chloride intracellular channel 4 (mitochondrial) | Clic4 |
| A_52_P230938 | -2,34 | 0,00082 | -2,02 | 0,00771 | lymphocyte antigen 6 complex, locus C | Ly6c |
| A_52_P93256 | -2,25 | 0,00047 | -1,49 | 0,00054 | angiopoietin-like 2 | Angptl2 |
| A_51_P384968 | -2,18 | 0,00046 | -1,34 | 0,00158 | nerve growth factor recept. (TNFR superfam., m16) | Ngfr |
| A_52_P427640 | -2,14 | 0,00009 | -1,84 | 0,00035 | serine (or cysteine) proteinase inhib. 3m | Serpina3m |
| A_51_P351896 | -2,08 | 0,00022 | -1,29 | 0,00214 | RIKEN cDNA 1110032E23 gene | 1110032E23Rik |
| A_51_P427663 | -2,08 | 0,00022 | -1,61 | 0,00043 | calponin 2 | Cnn2 |
| A_51_P248441 | -2,07 | 0,00061 | -1,23 | 0,00047 | ubiquitin-conjugating enzyme E2G 2 | Ube2g2 |
| A_51_P344263 | -2,01 | 0,00079 | -1,47 | 0,00115 | brain and acute leukemia, cytoplasmic | Baalc |
| A_51_P411253 | -2 | 0,00014 | -1,73 | 0,00062 | phosphoprotein enriched in astrocytes 15A | Pea15a |
| A_52_P201206 | -2 | 0,00022 | -1,31 | 0,00102 | secernin 1 | Scrn1 |
| A_51_P517843 | -1,94 | 0,00697 | -1,43 | 0,00125 | GLI pathogenesis-related 2 | Glipr2 |
| A_51_P503162 | -1,9 | 0,00064 | -1,48 | 0,00099 | Kruppel-like factor 6 | Klf6 |
| A_52_P359088 | -1,9 | 0,00704 | -1,4 | 0,00314 | solute carrier family 25 (mitochond., phosphat.) | Slc25a25 |
| A_52_P617327 | -1,76 | 0,00042 | -1,54 | 0,00049 | Down syndrome critical region homolog 1 (human) | Dscr1 |
| A_52_P403157 | -1,73 | 0,00131 | -4,01 | 0,00029 | sorbin and SH3 domain containing 2 | Sorbs2 |
| A_52_P246698 | -1,72 | 0,00036 | -1,6 | 0,00091 | down-regulated by Ctnnb1, a | Drctnnb1a |
| A_51_P103819 | -1,71 | 0,00173 | -1,2 | 0,00036 | similar to Tribbles homolog 2 (predicted) | RGD1564451_pred. |
Top 10 up-regulated genes co-regulated after treatment with conditioned neuronal medium (cnm) or ROCK inhibitor (Y27632)
| Probe set ID | Fold change | Fold change | Avgerage Fold-change | Gene name | Gene symbol |
| A_52_P624415 | 7,12 | 2,2 | transmembrane protein 10 | Tmem10 | |
| A_51_P304109 | 6,41 | 2,96 | cytochrome P450, family 2, subfamily c, polypept. 39 | Cyp2c39 | |
| A_52_P302587 | 5,55 | 1,48 | chimerin (chimaerin) 2 | Chn2 | |
| A_52_P229052 | 5,17 | 2,05 | transmembr. prot. with EGF-like, dom. 2 | Tmeff2 | |
| A_51_P103706 | 5,17 | 1,29 | cytochrome P450, family 2, subfamily c, polypept. 29 | Cyp2c29 | |
| A_51_P413005 | 5,08 | 1,43 | chimerin (chimaerin) 2 | Chn2 | |
| A_51_P454008 | 4,82 | 1,37 | lipopolysaccharide binding protein | Lbp | |
| A_51_P506822 | 4,65 | 1,25 | UDP galactosyltransferase 8A | Ugt8a | |
| A_51_P232901 | 4,37 | 1,47 | cyclic nucleotide phosphodiesterase 1 | Cnp1 | |
| A_52_P661327 | 4,31 | 1,3 | phytanoyl-CoA hydroxylase interacting protein-like | Phyhipl |
Figure 1Tmem10 is expressed during oligodendrocyte differentiation. (A) Primary oligodendrocytes were cultured for 2–3 days and levels of Tmem10 (green) expression were determined by immunofluorescence. The developmental stage of the cells was determined by costaining for NG2 (red) or O4 (blue). (B) Quantitative analysis of the Tmem10 immunofluorescence intensities. Values represent the mean ± SEM (n > 20 cells, ***p < 0,001). (C) Tmem10 (green) is expressed in O1 (red) positive oligodendrocytes (day 2) and (D) Tmem10 (green) is weakly expressed in A2B5 (red) positive cells (day 2). (E) Tmem10 (green) localizes to processes and rims of mature oligodendrocytes, expressing MBP (red) (day 5). Scale bars, 10 μm.
Figure 2Tmem10 is not detected on neurons, astrocytes and microglia. (A) Tmem10 (red) is specifically expressed in oligodendrocytes, but absent form GFAP-positive astrocytes (GFAP, green). (B) Tmem10 (green) is enriched in oligodendrocytes, labelled with O4 (blue) compared to neurons stained for neuronal βIII Tubulin (red). Tmem10 (green) is not detectable on (C) astrocytes (GFAP, red) and (D) microglia (stained with isolectin IB4 conjugated to Alexa Fluor 568, red) in cultures enriched for these cells types. Scale bars, 10 μm.
Figure 3Tmem10 is a type I transmembrane protein. (A) Alignment of mouse, rat and human Tmem10 amino acid sequence. Black/grey box indicates the predicted position of the transmembrane domain. (B) Oli-neu cells were transfected to express either N-terminal ECFP-tagged or C-terminal EYFP-tagged Tmem10. Subsequent staining with anti-GFP antibody was performed either on living, unpermeabilized (surface anti-GFP) or on fixed, permeabilized (after permeabilization anti-GFP) cells. Scale bars, 10 μm.
Figure 4Tmem10 colocalizes with actin in processes and membrane ruffles. (A) Oli-neu cells were transfected with a plasmid encoding for rat Tmem10 and subsequently stained for Tmem10 (green) and Actin (red) with rhodamin-labelled phalloidin. Note the colocalization of Tmem10 with Actin in processes and membrane ruffles. The absence of Tmem10 labelling in untransfected cells shows the specificity of the generated anti-Tmem10 antiserum. (B, C) Oli-neu cells were transfected with Tmem10-EYFP and treated with 2 μM latrunculin A for 30 min 16 h after transfection. (B) FRAP was measured by bleaching a squared region of interest within the cell body and fluorescence recovery in this regions was examined. Average FRAP tracings for 15 cells form 2 independent experiments are shown. (C) Tmem10-EYFP (green) accumulates in intracellular sites (arrow head) after disruption of the F-actin (red) cytoskeleton with latrunculin A. Scale bar, 10 μm.