Literature DB >> 18438605

Polyubiquitin chains: functions, structures, and mechanisms.

W Li1, Y Ye.   

Abstract

Ubiquitin is a highly conserved 76-amino acid polypeptide that is found throughout the eukaryotic kingdom. The covalent conjugation of ubiquitin (often in the form of a polymer) to substrates governs a variety of biological processes ranging from proteolysis to DNA damage tolerance. The functional flexibility of this post-translational modification has its roots in the existence of a large number of ubiquitinating enzymes that catalyze the formation of distinct ubiquitin polymers, which in turn encode different signals. This review summarizes recent advances in the field with an emphasis on the non-canonical functions of polyubiquitination. We also discuss the potential mechanism of chain linkage specification as well as how structural disparity in ubiquitin polymers may be distinguished by ubiquitin receptors to translate the versatile ubiquitin signals into various cellular functions.

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Year:  2008        PMID: 18438605      PMCID: PMC2700825          DOI: 10.1007/s00018-008-8090-6

Source DB:  PubMed          Journal:  Cell Mol Life Sci        ISSN: 1420-682X            Impact factor:   9.261


  82 in total

Review 1.  Themes and variations on ubiquitylation.

Authors:  A M Weissman
Journal:  Nat Rev Mol Cell Biol       Date:  2001-03       Impact factor: 94.444

2.  Protein dislocation from the ER requires polyubiquitination and the AAA-ATPase Cdc48.

Authors:  Ernst Jarosch; Christof Taxis; Corinna Volkwein; Javier Bordallo; Daniel Finley; Dieter H Wolf; Thomas Sommer
Journal:  Nat Cell Biol       Date:  2002-02       Impact factor: 28.824

3.  Molecular insights into polyubiquitin chain assembly: crystal structure of the Mms2/Ubc13 heterodimer.

Authors:  A P VanDemark; R M Hofmann; C Tsui; C M Pickart; C Wolberger
Journal:  Cell       Date:  2001-06-15       Impact factor: 41.582

4.  The AAA ATPase Cdc48/p97 and its partners transport proteins from the ER into the cytosol.

Authors:  Y Ye; H H Meyer; T A Rapoport
Journal:  Nature       Date:  2001-12-06       Impact factor: 49.962

5.  Mobilization of processed, membrane-tethered SPT23 transcription factor by CDC48(UFD1/NPL4), a ubiquitin-selective chaperone.

Authors:  M Rape; T Hoppe; I Gorr; M Kalocay; H Richly; S Jentsch
Journal:  Cell       Date:  2001-11-30       Impact factor: 41.582

6.  Role of the ubiquitin-selective CDC48(UFD1/NPL4 )chaperone (segregase) in ERAD of OLE1 and other substrates.

Authors:  Sigurd Braun; Kai Matuschewski; Michael Rape; Sven Thoms; Stefan Jentsch
Journal:  EMBO J       Date:  2002-02-15       Impact factor: 11.598

Review 7.  Mechanisms underlying ubiquitination.

Authors:  C M Pickart
Journal:  Annu Rev Biochem       Date:  2001       Impact factor: 23.643

Review 8.  Ubiquitin: structures, functions, mechanisms.

Authors:  Cecile M Pickart; Michael J Eddins
Journal:  Biochim Biophys Acta       Date:  2004-11-29

9.  AAA-ATPase p97/Cdc48p, a cytosolic chaperone required for endoplasmic reticulum-associated protein degradation.

Authors:  Efrat Rabinovich; Anat Kerem; Kai-Uwe Fröhlich; Noam Diamant; Shoshana Bar-Nun
Journal:  Mol Cell Biol       Date:  2002-01       Impact factor: 4.272

10.  HRD4/NPL4 is required for the proteasomal processing of ubiquitinated ER proteins.

Authors:  N W Bays; S K Wilhovsky; A Goradia; K Hodgkiss-Harlow; R Y Hampton
Journal:  Mol Biol Cell       Date:  2001-12       Impact factor: 4.138

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  99 in total

Review 1.  Cell signaling and mitochondrial dynamics: Implications for neuronal function and neurodegenerative disease.

Authors:  Theodore J Wilson; Andrew M Slupe; Stefan Strack
Journal:  Neurobiol Dis       Date:  2012-01-24       Impact factor: 5.996

2.  E3 ligases Arf-bp1 and Pam mediate lithium-stimulated degradation of the circadian heme receptor Rev-erb alpha.

Authors:  Lei Yin; Shree Joshi; Nan Wu; Xin Tong; Mitchell A Lazar
Journal:  Proc Natl Acad Sci U S A       Date:  2010-06-07       Impact factor: 11.205

3.  Characterization of selective ubiquitin and ubiquitin-like protease inhibitors using a fluorescence-based multiplex assay format.

Authors:  Xufan Tian; Nigora S Isamiddinova; Raymond J Peroutka; Seth J Goldenberg; Michael R Mattern; Benjamin Nicholson; Craig Leach
Journal:  Assay Drug Dev Technol       Date:  2010-12-06       Impact factor: 1.738

Review 4.  β-Arrestins: multifunctional signaling adaptors in type 2 diabetes.

Authors:  Xiaotao Feng; Wenjian Wang; Jibo Liu; Yi Liu
Journal:  Mol Biol Rep       Date:  2010-11-18       Impact factor: 2.316

5.  Differentiation of compact and extended conformations of di-ubiquitin conjugates with lysine-specific isopeptide linkages by ion mobility-mass spectrometry.

Authors:  Ji Eun Jung; Nicholas A Pierson; Andreas Marquardt; Martin Scheffner; Michael Przybylski; David E Clemmer
Journal:  J Am Soc Mass Spectrom       Date:  2011-05-24       Impact factor: 3.109

6.  Reciprocal regulation of aquaporin-2 abundance and degradation by protein kinase A and p38-MAP kinase.

Authors:  Pavel I Nedvetsky; Vedrana Tabor; Grazia Tamma; Sven Beulshausen; Philipp Skroblin; Aline Kirschner; Kerim Mutig; Mareike Boltzen; Oscar Petrucci; Anna Vossenkämper; Burkhard Wiesner; Sebastian Bachmann; Walter Rosenthal; Enno Klussmann
Journal:  J Am Soc Nephrol       Date:  2010-08-19       Impact factor: 10.121

Review 7.  Ubiquitination pathway as a target to develop abiotic stress tolerance in rice.

Authors:  Andressa Dametto; Giseli Buffon; Édina Aparecida Dos Reis Blasi; Raul Antonio Sperotto
Journal:  Plant Signal Behav       Date:  2015

Review 8.  Regulation of mitophagy by the ubiquitin pathway in neurodegenerative diseases.

Authors:  Shyamal Desai; Meredith Juncker; Catherine Kim
Journal:  Exp Biol Med (Maywood)       Date:  2018-01-09

Review 9.  Calcium signaling and biotic defense responses in plants.

Authors:  Lei Zhang; Liqun Du; B W Poovaiah
Journal:  Plant Signal Behav       Date:  2014

Review 10.  Malt1 and cIAP2-Malt1 as effectors of NF-kappaB activation: kissing cousins or distant relatives?

Authors:  Lara M Kingeter; Brian C Schaefer
Journal:  Cell Signal       Date:  2009-09-19       Impact factor: 4.315

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