Literature DB >> 18427854

Consistency principle in biological dynamical systems.

Kunihiko Kaneko1, Chikara Furusawa.   

Abstract

We propose a principle of consistency between different hierarchical levels of biological systems. Given a consistency between molecule replication and cell reproduction, universal statistical laws on cellular chemical abundances are derived and confirmed experimentally. They include a power law distribution of gene expressions, a lognormal distribution of cellular chemical abundances over cells, and embedding of the power law into the network connectivity distribution. Second, given a consistency between genotype and phenotype, a general relationship between phenotype fluctuations by genetic variation and isogenic phenotypic fluctuation by developmental noise is derived. Third, we discuss the chaos mechanism for stem cell differentiation with autonomous regulation, resulting from a consistency between cell reproduction and growth of the cell ensemble.

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Year:  2008        PMID: 18427854      PMCID: PMC2413129          DOI: 10.1007/s12064-008-0034-z

Source DB:  PubMed          Journal:  Theory Biosci        ISSN: 1431-7613            Impact factor:   1.919


  15 in total

1.  Theory of robustness of irreversible differentiation in a stem cell system: chaos hypothesis.

Authors:  C Furusawa; K Kaneko
Journal:  J Theor Biol       Date:  2001-04-21       Impact factor: 2.691

2.  General statistics of stochastic process of gene expression in eukaryotic cells.

Authors:  V A Kuznetsov; G D Knott; R F Bonner
Journal:  Genetics       Date:  2002-07       Impact factor: 4.562

3.  Zipf's law in gene expression.

Authors:  Chikara Furusawa; Kunihiko Kaneko
Journal:  Phys Rev Lett       Date:  2003-02-26       Impact factor: 9.161

4.  On the relation between fluctuation and response in biological systems.

Authors:  Katsuhiko Sato; Yoichiro Ito; Tetsuya Yomo; Kunihiko Kaneko
Journal:  Proc Natl Acad Sci U S A       Date:  2003-11-13       Impact factor: 11.205

5.  Evolutionary origin of power-laws in a biochemical reaction network: embedding the distribution of abundance into topology.

Authors:  Chikara Furusawa; Kunihiko Kaneko
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2006-01-23

6.  Global analysis of protein expression in yeast.

Authors:  Sina Ghaemmaghami; Won-Ki Huh; Kiowa Bower; Russell W Howson; Archana Belle; Noah Dephoure; Erin K O'Shea; Jonathan S Weissman
Journal:  Nature       Date:  2003-10-16       Impact factor: 49.962

7.  Universality and flexibility in gene expression from bacteria to human.

Authors:  Hiroki R Ueda; Satoko Hayashi; Shinichi Matsuyama; Tetsuya Yomo; Seiichi Hashimoto; Steve A Kay; John B Hogenesch; Masamitsu Iino
Journal:  Proc Natl Acad Sci U S A       Date:  2004-03-03       Impact factor: 11.205

8.  A map of the interactome network of the metazoan C. elegans.

Authors:  Siming Li; Christopher M Armstrong; Nicolas Bertin; Hui Ge; Stuart Milstein; Mike Boxem; Pierre-Olivier Vidalain; Jing-Dong J Han; Alban Chesneau; Tong Hao; Debra S Goldberg; Ning Li; Monica Martinez; Jean-François Rual; Philippe Lamesch; Lai Xu; Muneesh Tewari; Sharyl L Wong; Lan V Zhang; Gabriel F Berriz; Laurent Jacotot; Philippe Vaglio; Jérôme Reboul; Tomoko Hirozane-Kishikawa; Qianru Li; Harrison W Gabel; Ahmed Elewa; Bridget Baumgartner; Debra J Rose; Haiyuan Yu; Stephanie Bosak; Reynaldo Sequerra; Andrew Fraser; Susan E Mango; William M Saxton; Susan Strome; Sander Van Den Heuvel; Fabio Piano; Jean Vandenhaute; Claude Sardet; Mark Gerstein; Lynn Doucette-Stamm; Kristin C Gunsalus; J Wade Harper; Michael E Cusick; Frederick P Roth; David E Hill; Marc Vidal
Journal:  Science       Date:  2004-01-02       Impact factor: 47.728

9.  Adaptive response of a gene network to environmental changes by fitness-induced attractor selection.

Authors:  Akiko Kashiwagi; Itaru Urabe; Kunihiko Kaneko; Tetsuya Yomo
Journal:  PLoS One       Date:  2006-12-20       Impact factor: 3.240

10.  A generic mechanism for adaptive growth rate regulation.

Authors:  Chikara Furusawa; Kunihiko Kaneko
Journal:  PLoS Comput Biol       Date:  2008-01       Impact factor: 4.475

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  1 in total

1.  Relationship among phenotypic plasticity, phenotypic fluctuations, robustness, and evolvability; Waddington's legacy revisited under the spirit of Einstein.

Authors:  Kunihiko Kaneko
Journal:  J Biosci       Date:  2009-10       Impact factor: 1.826

  1 in total

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