Literature DB >> 18426776

Random walk models in biology.

Edward A Codling1, Michael J Plank, Simon Benhamou.   

Abstract

Mathematical modelling of the movement of animals, micro-organisms and cells is of great relevance in the fields of biology, ecology and medicine. Movement models can take many different forms, but the most widely used are based on the extensions of simple random walk processes. In this review paper, our aim is twofold: to introduce the mathematics behind random walks in a straightforward manner and to explain how such models can be used to aid our understanding of biological processes. We introduce the mathematical theory behind the simple random walk and explain how this relates to Brownian motion and diffusive processes in general. We demonstrate how these simple models can be extended to include drift and waiting times or be used to calculate first passage times. We discuss biased random walks and show how hyperbolic models can be used to generate correlated random walks. We cover two main applications of the random walk model. Firstly, we review models and results relating to the movement, dispersal and population redistribution of animals and micro-organisms. This includes direct calculation of mean squared displacement, mean dispersal distance, tortuosity measures, as well as possible limitations of these model approaches. Secondly, oriented movement and chemotaxis models are reviewed. General hyperbolic models based on the linear transport equation are introduced and we show how a reinforced random walk can be used to model movement where the individual changes its environment. We discuss the applications of these models in the context of cell migration leading to blood vessel growth (angiogenesis). Finally, we discuss how the various random walk models and approaches are related and the connections that underpin many of the key processes involved.

Mesh:

Year:  2008        PMID: 18426776      PMCID: PMC2504494          DOI: 10.1098/rsif.2008.0014

Source DB:  PubMed          Journal:  J R Soc Interface        ISSN: 1742-5662            Impact factor:   4.118


  36 in total

1.  Using animal movement paths to measure response to spatial scale.

Authors:  Vilis O Nams
Journal:  Oecologia       Date:  2005-01-19       Impact factor: 3.225

2.  Effective leadership and decision-making in animal groups on the move.

Authors:  Iain D Couzin; Jens Krause; Nigel R Franks; Simon A Levin
Journal:  Nature       Date:  2005-02-03       Impact factor: 49.962

3.  Calculating spatial statistics for velocity jump processes with experimentally observed reorientation parameters.

Authors:  E A Codling; N A Hill
Journal:  J Math Biol       Date:  2005-05-02       Impact factor: 2.259

4.  Mathematical modelling of dynamic adaptive tumour-induced angiogenesis: clinical implications and therapeutic targeting strategies.

Authors:  Steven R McDougall; Alexander R A Anderson; Mark A J Chaplain
Journal:  J Theor Biol       Date:  2006-02-17       Impact factor: 2.691

5.  Group navigation and the "many-wrongs principle" in models of animal movement.

Authors:  E A Codling; J W Pitchford; S D Simpson
Journal:  Ecology       Date:  2007-07       Impact factor: 5.499

6.  On the relationship between fractal dimension and encounters in three-dimensional trajectories.

Authors:  Marco Uttieri; Daniela Cianelli; J Rudi Strickler; Enrico Zambianchi
Journal:  J Theor Biol       Date:  2007-03-24       Impact factor: 2.691

7.  Models of dispersal in biological systems.

Authors:  H G Othmer; S R Dunbar; W Alt
Journal:  J Math Biol       Date:  1988       Impact factor: 2.259

8.  A descriptive theory of cell migration on surfaces.

Authors:  R Nossal; G H Weiss
Journal:  J Theor Biol       Date:  1974-09       Impact factor: 2.691

9.  Biased random walk models for chemotaxis and related diffusion approximations.

Authors:  W Alt
Journal:  J Math Biol       Date:  1980-04       Impact factor: 2.259

10.  Mathematical modeling of capillary formation and development in tumor angiogenesis: penetration into the stroma.

Authors:  H A Levine; S Pamuk; B D Sleeman; M Nilsen-Hamilton
Journal:  Bull Math Biol       Date:  2001-09       Impact factor: 1.758

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  214 in total

1.  A jump persistent turning walker to model zebrafish locomotion.

Authors:  Violet Mwaffo; Ross P Anderson; Sachit Butail; Maurizio Porfiri
Journal:  J R Soc Interface       Date:  2015-01-06       Impact factor: 4.118

2.  Models of collective cell behaviour with crowding effects: comparing lattice-based and lattice-free approaches.

Authors:  Michael J Plank; Matthew J Simpson
Journal:  J R Soc Interface       Date:  2012-06-13       Impact factor: 4.118

3.  A framework for understanding the architecture of collective movements using pairwise analyses of animal movement data.

Authors:  Leo Polansky; George Wittemyer
Journal:  J R Soc Interface       Date:  2010-09-08       Impact factor: 4.118

4.  Evolutionary optimality in stochastic search problems.

Authors:  Mark D Preston; Jonathan W Pitchford; A Jamie Wood
Journal:  J R Soc Interface       Date:  2010-03-24       Impact factor: 4.118

5.  A stochastic model for chemotaxis based on the ordered extension of pseudopods.

Authors:  Peter J M Van Haastert
Journal:  Biophys J       Date:  2010-11-17       Impact factor: 4.033

6.  Stochastic electrotransport selectively enhances the transport of highly electromobile molecules.

Authors:  Sung-Yon Kim; Jae Hun Cho; Evan Murray; Naveed Bakh; Heejin Choi; Kimberly Ohn; Luzdary Ruelas; Austin Hubbert; Meg McCue; Sara L Vassallo; Philipp J Keller; Kwanghun Chung
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-02       Impact factor: 11.205

7.  Navigating the flow: individual and continuum models for homing in flowing environments.

Authors:  Kevin J Painter; Thomas Hillen
Journal:  J R Soc Interface       Date:  2015-11-06       Impact factor: 4.118

8.  A framework for analyzing the robustness of movement models to variable step discretization.

Authors:  Ulrike E Schlägel; Mark A Lewis
Journal:  J Math Biol       Date:  2016-02-06       Impact factor: 2.259

Review 9.  The Biophysics of Visual Edge Detection: A Review of Basic Principles.

Authors:  Hassan Kesserwani
Journal:  Cureus       Date:  2020-10-28

10.  Evidence for intermittency and a truncated power law from highly resolved aphid movement data.

Authors:  Alla Mashanova; Tom H Oliver; Vincent A A Jansen
Journal:  J R Soc Interface       Date:  2009-05-27       Impact factor: 4.118

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