Literature DB >> 18424488

Tumor suppressor p53 slides on DNA with low friction and high stability.

Anahita Tafvizi1, Fang Huang, Jason S Leith, Alan R Fersht, Leonid A Mirny, Antoine M van Oijen.   

Abstract

The p53 protein, a transcription factor of key importance in tumorigenesis, is suggested to diffuse one-dimensionally along DNA via its C-terminal domain, a process that is proposed to regulate gene activation both positively and negatively. There has been no direct observation of p53 moving along DNA, however, and little is known about the mechanism and rate of its translocation. Here, we use single-molecule techniques to visualize, in real time, the one-dimensional diffusion of p53 along DNA. The one-dimensional diffusion coefficient is measured to be close to the theoretical limit, indicative of movement along a free energy landscape with low activation barriers. We further investigate the mechanism of translocation and determine that p53 is capable of sliding--moving along DNA while in continuous contact with the duplex, rather than through a series of hops between nearby bases.

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Year:  2008        PMID: 18424488      PMCID: PMC2426630          DOI: 10.1529/biophysj.108.134122

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  16 in total

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Authors:  B B Zhou; S J Elledge
Journal:  Nature       Date:  2000-11-23       Impact factor: 49.962

2.  Precise nanometer localization analysis for individual fluorescent probes.

Authors:  Russell E Thompson; Daniel R Larson; Watt W Webb
Journal:  Biophys J       Date:  2002-05       Impact factor: 4.033

Review 3.  How do site-specific DNA-binding proteins find their targets?

Authors:  Stephen E Halford; John F Marko
Journal:  Nucleic Acids Res       Date:  2004-06-03       Impact factor: 16.971

4.  Regulation of DNA binding of p53 by its C-terminal domain.

Authors:  Richard L Weinberg; Stefan M V Freund; Dmitry B Veprintsev; Mark Bycroft; Alan R Fersht
Journal:  J Mol Biol       Date:  2004-09-17       Impact factor: 5.469

5.  Kinetics of protein-DNA interaction: facilitated target location in sequence-dependent potential.

Authors:  Michael Slutsky; Leonid A Mirny
Journal:  Biophys J       Date:  2004-10-01       Impact factor: 4.033

6.  p53 linear diffusion along DNA requires its C terminus.

Authors:  Kristine McKinney; Melissa Mattia; Vanesa Gottifredi; Carol Prives
Journal:  Mol Cell       Date:  2004-11-05       Impact factor: 17.970

7.  Diffusion-driven mechanisms of protein translocation on nucleic acids. 3. The Escherichia coli lac repressor--operator interaction: kinetic measurements and conclusions.

Authors:  R B Winter; O G Berg; P H von Hippel
Journal:  Biochemistry       Date:  1981-11-24       Impact factor: 3.162

8.  Diffusion-driven mechanisms of protein translocation on nucleic acids. 1. Models and theory.

Authors:  O G Berg; R B Winter; P H von Hippel
Journal:  Biochemistry       Date:  1981-11-24       Impact factor: 3.162

9.  Transcriptional activation by p53 correlates with suppression of growth but not transformation.

Authors:  T Crook; N J Marston; E A Sara; K H Vousden
Journal:  Cell       Date:  1994-12-02       Impact factor: 41.582

10.  C-terminal diversity within the p53 family accounts for differences in DNA binding and transcriptional activity.

Authors:  Markus Sauer; Anne Catherine Bretz; Rasa Beinoraviciute-Kellner; Michaela Beitzinger; Christof Burek; Andreas Rosenwald; Gregory S Harms; Thorsten Stiewe
Journal:  Nucleic Acids Res       Date:  2008-02-11       Impact factor: 16.971

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  76 in total

1.  p53 basic C terminus regulates p53 functions through DNA binding modulation of subset of target genes.

Authors:  Pierre-Jacques Hamard; Dana J Lukin; James J Manfredi
Journal:  J Biol Chem       Date:  2012-04-18       Impact factor: 5.157

2.  ATP alters the diffusion mechanics of MutS on mismatched DNA.

Authors:  Won-Ki Cho; Cherlhyun Jeong; Daehyung Kim; Minhyeok Chang; Kyung-Mi Song; Jeungphill Hanne; Changill Ban; Richard Fishel; Jong-Bong Lee
Journal:  Structure       Date:  2012-06-07       Impact factor: 5.006

3.  Nonspecific protein-DNA binding is widespread in the yeast genome.

Authors:  Ariel Afek; David B Lukatsky
Journal:  Biophys J       Date:  2012-04-18       Impact factor: 4.033

4.  Facilitated DNA search by multidomain transcription factors: cross talk via a flexible linker.

Authors:  Dana Vuzman; Michal Polonsky; Yaakov Levy
Journal:  Biophys J       Date:  2010-08-09       Impact factor: 4.033

5.  Dynamic strategies for target-site search by DNA-binding proteins.

Authors:  Mario A Díaz de la Rosa; Elena F Koslover; Peter J Mulligan; Andrew J Spakowitz
Journal:  Biophys J       Date:  2010-06-16       Impact factor: 4.033

6.  Tracking of single quantum dot labeled EcoRV sliding along DNA manipulated by double optical tweezers.

Authors:  Andreas Biebricher; Wolfgang Wende; Christophe Escudé; Alfred Pingoud; Pierre Desbiolles
Journal:  Biophys J       Date:  2009-04-22       Impact factor: 4.033

7.  Positive and negative design for nonconsensus protein-DNA binding affinity in the vicinity of functional binding sites.

Authors:  Ariel Afek; David B Lukatsky
Journal:  Biophys J       Date:  2013-10-01       Impact factor: 4.033

8.  Sequence-dependent sliding kinetics of p53.

Authors:  Jason S Leith; Anahita Tafvizi; Fang Huang; William E Uspal; Patrick S Doyle; Alan R Fersht; Leonid A Mirny; Antoine M van Oijen
Journal:  Proc Natl Acad Sci U S A       Date:  2012-09-25       Impact factor: 11.205

9.  Thioredoxin suppresses microscopic hopping of T7 DNA polymerase on duplex DNA.

Authors:  Candice M Etson; Samir M Hamdan; Charles C Richardson; Antoine M van Oijen
Journal:  Proc Natl Acad Sci U S A       Date:  2010-01-11       Impact factor: 11.205

Review 10.  The Tail That Wags the Dog: How the Disordered C-Terminal Domain Controls the Transcriptional Activities of the p53 Tumor-Suppressor Protein.

Authors:  Oleg Laptenko; David R Tong; James Manfredi; Carol Prives
Journal:  Trends Biochem Sci       Date:  2016-09-23       Impact factor: 13.807

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