Literature DB >> 18422302

Allostery: DNA does it, too.

Jonathan B Chaires1.   

Abstract

Allostery is a central concept for understanding protein function and regulation. It is less well appreciated that DNA is allosteric, too, and that DNA conformational changes can by coupled to protein binding interactions on the DNA lattice. Allosteric DNA interactions are emerging as important features in the assembly of the molecular machines that regulate transcription.

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Year:  2008        PMID: 18422302     DOI: 10.1021/cb800070s

Source DB:  PubMed          Journal:  ACS Chem Biol        ISSN: 1554-8929            Impact factor:   5.100


  17 in total

1.  On the Use of Molecular Dynamics Simulations for Probing Allostery through DNA.

Authors:  Tomáš Dršata; Marie Zgarbová; Petr Jurečka; Jiří Šponer; Filip Lankaš
Journal:  Biophys J       Date:  2016-01-27       Impact factor: 4.033

2.  Energy crosstalk between DNA lesions: implications for allosteric coupling of DNA repair and triplet repeat expansion pathways.

Authors:  Jens Völker; G Eric Plum; Horst H Klump; Kenneth J Breslauer
Journal:  J Am Chem Soc       Date:  2010-03-31       Impact factor: 15.419

3.  How do transcription factors select specific binding sites in the genome?

Authors:  Yongping Pan; Chung-Jung Tsai; Buyong Ma; Ruth Nussinov
Journal:  Nat Struct Mol Biol       Date:  2009-11       Impact factor: 15.369

4.  Correlation of local effects of DNA sequence and position of β-alanine inserts with polyamide-DNA complex binding affinities and kinetics.

Authors:  Shuo Wang; Rupesh Nanjunda; Karl Aston; James K Bashkin; W David Wilson
Journal:  Biochemistry       Date:  2012-11-28       Impact factor: 3.162

Review 5.  Binding to the DNA minor groove by heterocyclic dications: from AT-specific monomers to GC recognition with dimers.

Authors:  Rupesh Nanjunda; W David Wilson
Journal:  Curr Protoc Nucleic Acid Chem       Date:  2012-12

6.  Allosterism and signal transfer in DNA.

Authors:  Alexandra Balaceanu; Alberto Pérez; Pablo D Dans; Modesto Orozco
Journal:  Nucleic Acids Res       Date:  2018-09-06       Impact factor: 16.971

7.  Characterization of a K+-induced conformational switch in a human telomeric DNA oligonucleotide using 2-aminopurine fluorescence.

Authors:  Robert D Gray; Luigi Petraccone; John O Trent; Jonathan B Chaires
Journal:  Biochemistry       Date:  2010-01-12       Impact factor: 3.162

8.  DNA repair and DNA triplet repeat expansion: the impact of abasic lesions on triplet repeat DNA energetics.

Authors:  Jens Völker; G Eric Plum; Horst H Klump; Kenneth J Breslauer
Journal:  J Am Chem Soc       Date:  2009-07-08       Impact factor: 15.419

9.  Energetics and kinetics of a conformational switch in G-quadruplex DNA.

Authors:  Robert D Gray; Jing Li; Jonathan B Chaires
Journal:  J Phys Chem B       Date:  2009-03-05       Impact factor: 2.991

10.  Cooperativity dominates the genomic organization of p53-response elements: a mechanistic view.

Authors:  Yongping Pan; Ruth Nussinov
Journal:  PLoS Comput Biol       Date:  2009-07-24       Impact factor: 4.475

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