Literature DB >> 18421128

X-ray structure refinement using aspherical atomic density functions obtained from quantum-mechanical calculations.

Dylan Jayatilaka1, Birger Dittrich.   

Abstract

An approach is outlined for X-ray structure refinement using atomic density fragments obtained by Hirshfeld partitioning of quantum-mechanical density fragments. Results are presented for crystal structure refinements of urea and benzene using these 'Hirshfeld atoms'. Using this procedure, the quantum-mechanical non-spherical electron density is taken into account in the structural model based on the conformation found in the crystal. Contrary to current consensus in structure refinement, the anisotropic displacement parameters of H atoms can be reproduced from neutron diffraction measurements simply from a least-squares fit using the Hirshfeld atoms derived from the BLYP level of theory and including a simple point-charge model to treat the crystal environment.

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Year:  2008        PMID: 18421128     DOI: 10.1107/S0108767308005709

Source DB:  PubMed          Journal:  Acta Crystallogr A        ISSN: 0108-7673            Impact factor:   2.290


  31 in total

1.  DiSCaMB: a software library for aspherical atom model X-ray scattering factor calculations with CPUs and GPUs.

Authors:  Michał L Chodkiewicz; Szymon Migacz; Witold Rudnicki; Anna Makal; Jarosław A Kalinowski; Nigel W Moriarty; Ralf W Grosse-Kunstleve; Pavel V Afonine; Paul D Adams; Paulina Maria Dominiak
Journal:  J Appl Crystallogr       Date:  2018-02-01       Impact factor: 3.304

2.  Influence of modelling disorder on Hirshfeld atom refinement results of an organo-gold(I) compound.

Authors:  Sylwia Pawlędzio; Maura Malinska; Florian Kleemiss; Simon Grabowsky; Krzysztof Woźniak
Journal:  IUCrJ       Date:  2022-06-11       Impact factor: 5.588

3.  lamaGOET: an interface for quantum crystallography.

Authors:  Lorraine A Malaspina; Alessandro Genoni; Simon Grabowsky
Journal:  J Appl Crystallogr       Date:  2021-04-16       Impact factor: 3.304

4.  On the error in the nucleus-centered multipolar expansion of molecular electron density and its topology: A direct-space computational study.

Authors:  J Robert Michael; Tibor Koritsanszky
Journal:  J Chem Phys       Date:  2017-05-28       Impact factor: 3.488

Review 5.  Modelling the experimental electron density: only the synergy of various approaches can tackle the new challenges.

Authors:  Piero Macchi; Jean-Michel Gillet; Francis Taulelle; Javier Campo; Nicolas Claiser; Claude Lecomte
Journal:  IUCrJ       Date:  2015-05-14       Impact factor: 4.769

6.  Accurate crystal structures and chemical properties from NoSpherA2.

Authors:  Florian Kleemiss; Oleg V Dolomanov; Michael Bodensteiner; Norbert Peyerimhoff; Laura Midgley; Luc J Bourhis; Alessandro Genoni; Lorraine A Malaspina; Dylan Jayatilaka; John L Spencer; Fraser White; Bernhard Grundkötter-Stock; Simon Steinhauer; Dieter Lentz; Horst Puschmann; Simon Grabowsky
Journal:  Chem Sci       Date:  2020-11-09       Impact factor: 9.825

7.  Refinement of organic crystal structures with multipolar electron scattering factors.

Authors:  Barbara Gruza; Michał Leszek Chodkiewicz; Joanna Krzeszczakowska; Paulina Maria Dominiak
Journal:  Acta Crystallogr A Found Adv       Date:  2020-01-01       Impact factor: 2.290

8.  Relativistic Hirshfeld atom refinement of an organo-gold(I) compound.

Authors:  Sylwia Pawlędzio; Maura Malinska; Magdalena Woińska; Jakub Wojciechowski; Lorraine Andrade Malaspina; Florian Kleemiss; Simon Grabowsky; Krzysztof Woźniak
Journal:  IUCrJ       Date:  2021-05-26       Impact factor: 4.769

9.  The advanced treatment of hydrogen bonding in quantum crystallography.

Authors:  Lorraine A Malaspina; Alessandro Genoni; Dylan Jayatilaka; Michael J Turner; Kunihisa Sugimoto; Eiji Nishibori; Simon Grabowsky
Journal:  J Appl Crystallogr       Date:  2021-04-16       Impact factor: 3.304

10.  Estimating temperature-dependent anisotropic hydrogen displacements with the invariom database and a new segmented rigid-body analysis program.

Authors:  Jens Lübben; Luc J Bourhis; Birger Dittrich
Journal:  J Appl Crystallogr       Date:  2015-11-10       Impact factor: 3.304

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