Literature DB >> 18417659

Comparison of DNA pyrosequencing with alternative methods for identification of mycobacteria.

Loree C Heller1, Michael Jones, Ray H Widen.   

Abstract

Identification of mycobacterial clinical isolates by pyrosequencing within the hypervariable A region of the 16S rRNA gene was compared to other identification methods. For >90% of isolates, these identifications correlated to the level of complex or species. For identification of many mycobacteria, pyrosequencing offers an inexpensive alternative to traditional sequencing.

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Year:  2008        PMID： 18417659      PMCID： PMC2446853          DOI： 10.1128/JCM.02001-07

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN： 0095-1137            Impact factor:   5.948


  9 in total

Review 1.  Pyrosequencing sheds light on DNA sequencing.

Authors:  M Ronaghi
Journal:  Genome Res       Date:  2001-01       Impact factor: 9.043

Review 2.  Newly described or emerging human species of nontuberculous mycobacteria.

Authors:  Barbara A Brown-Elliott; David E Griffith; Richard J Wallace
Journal:  Infect Dis Clin North Am       Date:  2002-03       Impact factor: 5.982

3.  Necessity of quality-controlled 16S rRNA gene sequence databases: identifying nontuberculous Mycobacterium species.

Authors:  C Y Turenne; L Tschetter; J Wolfe; A Kabani
Journal:  J Clin Microbiol       Date:  2001-10       Impact factor: 5.948

4.  Intuitive hypertext-based molecular identification of micro-organisms.

Authors:  D Harmsen; J Rothgänger; C Singer; J Albert; M Frosch
Journal:  Lancet       Date:  1999-01-23       Impact factor: 79.321

Review 5.  Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.

Authors:  S F Altschul; T L Madden; A A Schäffer; J Zhang; Z Zhang; W Miller; D J Lipman
Journal:  Nucleic Acids Res       Date:  1997-09-01       Impact factor: 16.971

6.  Rapid identification of mycobacteria to the species level by polymerase chain reaction and restriction enzyme analysis.

Authors:  A Telenti; F Marchesi; M Balz; F Bally; E C Böttger; T Bodmer
Journal:  J Clin Microbiol       Date:  1993-02       Impact factor: 5.948

7.  Pyrosequencing as a tool for the identification of common isolates of Mycobacterium sp.

Authors:  Marion J Tuohy; Gerri S Hall; Mary Sholtis; Gary W Procop
Journal:  Diagn Microbiol Infect Dis       Date:  2005-04       Impact factor: 2.803

Review 8.  Impact of genotypic studies on mycobacterial taxonomy: the new mycobacteria of the 1990s.

Authors:  Enrico Tortoli
Journal:  Clin Microbiol Rev       Date:  2003-04       Impact factor: 26.132

9.  The ribosomal database project (RDP-II): introducing myRDP space and quality controlled public data.

Authors:  J R Cole; B Chai; R J Farris; Q Wang; A S Kulam-Syed-Mohideen; D M McGarrell; A M Bandela; E Cardenas; G M Garrity; J M Tiedje
Journal:  Nucleic Acids Res       Date:  2006-11-07       Impact factor: 16.971
  9 in total
  7 in total

Review 1.  Matrix-assisted laser desorption ionization-time of flight mass spectrometry: a fundamental shift in the routine practice of clinical microbiology.

Authors:  Andrew E Clark; Erin J Kaleta; Amit Arora; Donna M Wolk
Journal:  Clin Microbiol Rev       Date:  2013-07       Impact factor: 26.132

Review 2.  Laboratory diagnosis of tuberculosis in resource-poor countries: challenges and opportunities.

Authors:  Linda M Parsons; Akos Somoskövi; Cristina Gutierrez; Evan Lee; C N Paramasivan; Alash'le Abimiku; Steven Spector; Giorgio Roscigno; John Nkengasong
Journal:  Clin Microbiol Rev       Date:  2011-04       Impact factor: 26.132

3.  Detection of Yersinia enterocolitica in alfalfa, mung bean, cilantro, and mamey sapote (Pouteria sapota) food matrices using DNA microarray chip hybridization.

Authors:  Nusrat Siddique; Devang Sharma; Sufian F Al-Khaldi
Journal:  Curr Microbiol       Date:  2009-06-06       Impact factor: 2.188

4.  Pyrosequencing assay for rapid identification of Mycobacterium tuberculosis complex species.

Authors:  Imen Ben Kahla; Mireille Henry; Jalel Boukadida; Michel Drancourt
Journal:  BMC Res Notes       Date:  2011-10-19

5.  Approaches to analyse dynamic microbial communities such as those seen in cystic fibrosis lung.

Authors:  Melissa Doud; Erliang Zeng; Lisa Schneper; Giri Narasimhan; Kalai Mathee
Journal:  Hum Genomics       Date:  2009-04       Impact factor: 4.639

6.  Prospecting environmental mycobacteria: combined molecular approaches reveal unprecedented diversity.

Authors:  Alessandra Pontiroli; Tanya T Khera; Brian B Oakley; Sam Mason; Scot E Dowd; Emma R Travis; Girum Erenso; Abraham Aseffa; Orin Courtenay; Elizabeth M H Wellington
Journal:  PLoS One       Date:  2013-07-18       Impact factor: 3.240

Review 7.  Recent advances in diagnostic microbiology.

Authors:  Lulette Tricia C Bravo; Gary W Procop
Journal:  Semin Hematol       Date:  2009-07       Impact factor: 3.851
  7 in total

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