Literature DB >> 18412537

Single-molecule studies of protein folding.

Alessandro Borgia1, Philip M Williams, Jane Clarke.   

Abstract

Although protein-folding studies began several decades ago, it is only recently that the tools to analyze protein folding at the single-molecule level have been developed. Advances in single-molecule fluorescence and force spectroscopy techniques allow investigation of the folding and dynamics of single protein molecules, both at equilibrium and as they fold and unfold. The experiments are far from simple, however, both in execution and in interpretation of the results. In this review, we discuss some of the highlights of the work so far and concentrate on cases where comparisons with the classical experiments can be made. We conclude that, although there have been relatively few startling insights from single-molecule studies, the rapid progress that has been made suggests that these experiments have significant potential to advance our understanding of protein folding. In particular, new techniques offer the possibility to explore regions of the energy landscape that are inaccessible to classical ensemble measurements and, perhaps, to observe rare events undetectable by other means.

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Year:  2008        PMID: 18412537     DOI: 10.1146/annurev.biochem.77.060706.093102

Source DB:  PubMed          Journal:  Annu Rev Biochem        ISSN: 0066-4154            Impact factor:   23.643


  96 in total

1.  Effects of pH on proteins: predictions for ensemble and single-molecule pulling experiments.

Authors:  Edward P O'Brien; Bernard R Brooks; D Thirumalai
Journal:  J Am Chem Soc       Date:  2011-12-27       Impact factor: 15.419

Review 2.  Ratcheting up protein translocation with anthrax toxin.

Authors:  Geoffrey K Feld; Michael J Brown; Bryan A Krantz
Journal:  Protein Sci       Date:  2012-03-30       Impact factor: 6.725

3.  Direct observation of multiple misfolding pathways in a single prion protein molecule.

Authors:  Hao Yu; Xia Liu; Krishna Neupane; Amar Nath Gupta; Angela M Brigley; Allison Solanki; Iveta Sosova; Michael T Woodside
Journal:  Proc Natl Acad Sci U S A       Date:  2012-03-15       Impact factor: 11.205

4.  Dynamics of protein folding and cofactor binding monitored by single-molecule force spectroscopy.

Authors:  Yi Cao; Hongbin Li
Journal:  Biophys J       Date:  2011-10-19       Impact factor: 4.033

5.  Fluorescence characteristics of isolated dye molecules within silicalite-1 channels.

Authors:  Tae Kyu Shim; Myoung Hee Lee; Doseok Kim; Hyun Sung Kim; Kyung Byung Yoon
Journal:  J Fluoresc       Date:  2012-06-28       Impact factor: 2.217

6.  Low folding cooperativity of HP35 revealed by single-molecule force spectroscopy and molecular dynamics simulation.

Authors:  Chunmei Lv; Cheng Tan; Meng Qin; Dawei Zou; Yi Cao; Wei Wang
Journal:  Biophys J       Date:  2012-04-18       Impact factor: 4.033

7.  Single-molecule spectroscopy of protein folding in a chaperonin cage.

Authors:  Hagen Hofmann; Frank Hillger; Shawn H Pfeil; Armin Hoffmann; Daniel Streich; Dominik Haenni; Daniel Nettels; Everett A Lipman; Benjamin Schuler
Journal:  Proc Natl Acad Sci U S A       Date:  2010-06-14       Impact factor: 11.205

8.  Collapse dynamics of single proteins extended by force.

Authors:  Ronen Berkovich; Sergi Garcia-Manyes; Michael Urbakh; Joseph Klafter; Julio M Fernandez
Journal:  Biophys J       Date:  2010-06-02       Impact factor: 4.033

9.  Correction of the viscous drag induced errors in macromolecular manipulation experiments using atomic force microscope.

Authors:  Runcong Liu; Marisa Roman; Guoliang Yang
Journal:  Rev Sci Instrum       Date:  2010-06       Impact factor: 1.523

10.  Full reconstruction of a vectorial protein folding pathway by atomic force microscopy and molecular dynamics simulations.

Authors:  Whasil Lee; Xiancheng Zeng; Huan-Xiang Zhou; Vann Bennett; Weitao Yang; Piotr E Marszalek
Journal:  J Biol Chem       Date:  2010-09-24       Impact factor: 5.157

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